View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7383_high_18 (Length: 211)

Name: NF7383_high_18
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7383_high_18
NF7383_high_18
[»] chr7 (16 HSPs)
chr7 (19-196)||(21763909-21764084)
chr7 (25-195)||(21771805-21771977)
chr7 (26-164)||(21628001-21628140)
chr7 (25-141)||(21704542-21704659)
chr7 (23-138)||(21651971-21652087)
chr7 (23-196)||(15713455-15713641)
chr7 (26-159)||(21714067-21714198)
chr7 (25-195)||(21725740-21725912)
chr7 (26-117)||(21788152-21788244)
chr7 (26-169)||(21808298-21808445)
chr7 (25-195)||(21785245-21785422)
chr7 (59-152)||(21740994-21741087)
chr7 (26-141)||(21992069-21992188)
chr7 (23-141)||(21663994-21664116)
chr7 (23-183)||(21681494-21681668)
chr7 (23-63)||(21646720-21646761)
[»] scaffold0182 (2 HSPs)
scaffold0182 (19-196)||(25160-25332)
scaffold0182 (60-195)||(34378-34514)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 21764084 - 21763909
Alignment:
Q  19 aatatggcaccctttgtatcttgg-tcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcat 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||| ||| |||||||||||||||| |||||||| |||||||||    
T  21764084 aatatggcaccctttgtatcttgggtcgtgaattttggggtgtttgctttga---ttgtagctccacaaatttttctttaagagtttgggatgccatcat 21763988  T
Q  118 tcattcaatattctaatggttgagagatattgatcttgcaaagttacgaaattatgaatcaaaatgcggattatatatt 196  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  21763987 tcattcaatacactaatggttgagggatattgatcttgcaaagttacgaaatcatgaatgaaaatgcggattatatatt 21763909  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 21771977 - 21771805
Alignment:
Q  25 gcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattc 123  Q
    |||||||||||||||| |||| ||||||||||||| |||||||||| |||||||  || |||||||||||||||||||||| || |||||||||||||||    
T  21771977 gcaccctttgtatcttcggtcttgaattttggggtatttgctttgatttttgtagttccacaaatttttctttaatagtttcggatgccatcattcattc 21771878  T
Q  124 aatattctaatggttgagagatattgatcttgcaaagtt-acgaaattatgaatcaaaatgcggattatatat 195  Q
    |||||  ||||||||||| |||||||||||| |||| || | |||| ||  |||||||||||| |||||||||    
T  21771877 aatatgataatggttgagggatattgatctttcaaacttgatgaaaatacaaatcaaaatgcgtattatatat 21771805  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 21628140 - 21628001
Alignment:
Q  26 caccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattca 124  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  21628140 caccctttgtatctttggtcgtgcatttcggggtgtttgctttgaattttttaactccacaaatttttctttaatagtttgggatgccatcattctttca 21628041  T
Q  125 atattctaatggttgagagatattgatcttgcaaagttac 164  Q
    ||||  |||||||||||  ||||||||||| |||| ||||    
T  21628040 atataataatggttgaggaatattgatctttcaaacttac 21628001  T

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Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 21704659 - 21704542
Alignment:
Q  25 gcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattc 123  Q
    |||||||||||||||| ||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  21704659 gcaccctttgtatctttggtcgtgcatttggaggtgtttgctttgaattttttaactcgacaaatttttctttaatagtttgggatgccatcattcattc 21704560  T
Q  124 aatattctaatggttgag 141  Q
    |||||  |||||||||||    
T  21704559 aatataataatggttgag 21704542  T

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Target: chr7; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 21652087 - 21651971
Alignment:
Q  23 tggcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcat 121  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  || ||||||||||||||||||||||||| ||||||||||||     
T  21652087 tggcaccctttgtatctttggtcgtgaattttggggtgtttgctttgatttttgtagttccacaaatttttctttaatagtttgggatgccatcattcaa 21651988  T
Q  122 tcaatattctaatggtt 138  Q
    |||||||  ||||||||    
T  21651987 tcaatataataatggtt 21651971  T

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Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 15713641 - 15713455
Alignment:
Q  23 tggcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattt---------tgtaactcgacaaatttttctttaa---tagtttggggt 109  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| ||||         |||| ||| |||| ||||| || ||   ||||||| | |    
T  15713641 tggcaccctttgtatctttggtcgtgaactttggggtgtttgctttgtatttatgtaactttgtagctccacaatttttttttcaagggtagtttgcgat 15713542  T
Q  110 gccatcattcattcaatattctaatggttgagagatattgatcttgcaaagttacgaaattatgaatcaaaatgcggattatatatt 196  Q
    ||||||||||||||| |||  | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15713541 gccatcattcattcattataatcatggttgagggatattgatcttgcaaagtcacgaaattatgaatcaaaatgcggattatatatt 15713455  T

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Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 21714198 - 21714067
Alignment:
Q  26 caccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattca 124  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  21714198 caccctttgtatcttcggtcgtgaattttggggtgtttgcattgatttttgtagctccacaaatttttctttaatagtttgggatgccatccttcattca 21714099  T
Q  125 atattctaatggttgagagatattgatcttgcaaa 159  Q
    |||   ||||  ||||| |||||||||||| ||||    
T  21714098 ata---taatatttgagggatattgatctttcaaa 21714067  T

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Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 21725912 - 21725740
Alignment:
Q  25 gcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattc 123  Q
    |||||||||||||||| |||| ||||||||||| | |||||||||| |||||||  || |||||||||||||||||||||| || |||||||||||||||    
T  21725912 gcaccctttgtatcttcggtcttgaattttgggatatttgctttgatttttgtagttccacaaatttttctttaatagtttcggatgccatcattcattc 21725813  T
Q  124 aatattctaatggttgagagatattgatcttgcaaagtt-acgaaattatgaatcaaaatgcggattatatat 195  Q
    |||||  ||||||||||| || ||||||||  |||| || | |||| ||  |||||||||||| |||||||||    
T  21725812 aatatgataatggttgagggaaattgatctgtcaaacttgatgaaaatacaaatcaaaatgcgtattatatat 21725740  T

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Target: chr7; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 21788244 - 21788152
Alignment:
Q  26 caccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcat 117  Q
    |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  21788244 caccctttgtattttcggtcgtgaattttggggtgtttgctttgatttttgtaactccacaaatttttcattaatagtttgggatgccatcat 21788152  T

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Target: chr7; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 21808298 - 21808445
Alignment:
Q  26 caccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaa---tagtttggggtgccatcattcat 121  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||||||| || ||| ||||  |||| || ||   ||||||||| | |||||||||||    
T  21808298 caccctttgtatctttggtcgtgaattttggggtatttgatttgaattttttagctccacaatctttttttcaagggtagtttgggattccatcattcat 21808397  T
Q  122 tcaatattctaatggttgagagatattgatcttgcaaagttacgaaat 169  Q
    |||||||  |||||| ||||  |||||||||||||||||| |||||||    
T  21808398 tcaatataataatggctgaggaatattgatcttgcaaagtaacgaaat 21808445  T

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Target: chr7; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 21785422 - 21785245
Alignment:
Q  25 gcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaa---tagtttggggtgccatcattca 120  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||| |||| ||||| || ||   ||||||||| || ||||||| |    
T  21785422 gcaccctttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaatttttttttcaagggtagtttgggatgtcatcattga 21785323  T
Q  121 ttcaatattctaatggttgagagatattgatc--ttgcaaagtt-acgaaattatgaatcaaaatgcggattatatat 195  Q
    ||||||||  |||||||| || ||||||||||  || |||| || | |||| ||  ||||||||||||||||||||||    
T  21785322 ttcaatatgataatggttaagggatattgatctttttcaaacttgatgaaaatacaaatcaaaatgcggattatatat 21785245  T

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Target: chr7; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 21741087 - 21740994
Alignment:
Q  59 gtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattcaatattctaatggttgagagatattgatc 152  Q
    ||||||||| | ||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||  |||||||||||  |||||||||    
T  21741087 gtttgctttaatttttgtagctccacaattttttctttaatagtttgggatgccatcattcattcaatataataatggttgaggaatattgatc 21740994  T

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Target: chr7; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 21992188 - 21992069
Alignment:
Q  26 caccctttgtatct-tggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaa---tagtttggggtgccatcattcat 121  Q
    |||||||||||||| || |||||||||||||||| ||||||||||||||| || ||| |||| |||||||| ||    |||||||| |||||||||||||    
T  21992188 caccctttgtatctgtgttcgtgaattttggggtatttgctttgaattttctagctccacaattttttcttcaagggaagtttgggatgccatcattcat 21992089  T
Q  122 tcaatattctaatggttgag 141  Q
    |||||||  |||||||||||    
T  21992088 tcaatataataatggttgag 21992069  T

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Target: chr7; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 21664116 - 21663994
Alignment:
Q  23 tggcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaa---tagtttggggtgccatcatt 118  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||||||||||| || ||| |||| ||||| || ||   ||||||||| ||||||||||    
T  21664116 tggcaccctttgtatctttggtcgtgaactttggggtatttgctttgaattttctagctccacaatttttttttcaagggtagtttgggatgccatcatt 21664017  T
Q  119 cattcaatattctaatggttgag 141  Q
    | ||||||||  |||||||||||    
T  21664016 ctttcaatataataatggttgag 21663994  T

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Target: chr7; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 21681668 - 21681494
Alignment:
Q  23 tggcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaat---------tttgtaactcgacaaatttttctttaa---tagtttggggt 109  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| ||         |||||| ||| ||||  ||||||| ||   ||||||||| |    
T  21681668 tggcaccctttgtatctttggtcgtgaattttggggtgtttgatttgtatctatgtatatttgtagctccacaatattttcttcaagggtagtttgggat 21681569  T
Q  110 gccatcattcattcaatattctaatggttgagagatattgatcttgcaaagtt-acgaaattatgaatcaaaatg 183  Q
    | ||||||||||||||| |  |||||||||||  ||||||||||| |||| || |||||||||| ||||||||||    
T  21681568 gacatcattcattcaatgtaataatggttgaggaatattgatctttcaaacttaacgaaattataaatcaaaatg 21681494  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 21646761 - 21646720
Alignment:
Q  23 tggcaccctttgtatctt-ggtcgtgaattttggggtgtttg 63  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  21646761 tggcaccctttgtatctttggtcgtgaattttggggtgtttg 21646720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 25332 - 25160
Alignment:
Q  19 aatatggcaccctttgtatcttgg-tcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcat 117  Q
    |||||| ||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |||  ||| ||||||||||| |||||||| |||||||||    
T  25332 aatatgccaccctttgtatcttgggtggtgaattttggggtgtttgctttgatttttgtagctcctcaattttttctttaagagtttgggctgccatcat 25233  T
Q  118 tcattcaatattctaatggttgagagatattgatcttgcaaagttacgaaattatgaatcaaaatgcggattatatatt 196  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||||      |||||||||||||||||||||||    
T  25232 tcattcaatacactaatggttgagggatattgatcttgcaaagttacgaa------aatcaaaatgcggattatatatt 25160  T

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Target: scaffold0182; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 34514 - 34378
Alignment:
Q  60 tttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattcaatattctaatggttgagagatattgatcttgcaaa 159  Q
    |||||||||| |||||||  || |||||||||||||||||||||| || ||||||||||||||||||||  ||||||||||| || ||||||||  ||||    
T  34514 tttgctttgatttttgtagttccacaaatttttctttaatagtttcggatgccatcattcattcaatatgataatggttgagggaaattgatctgtcaaa 34415  T
Q  160 gtt-acgaaattatgaatcaaaatgcggattatatat 195  Q
     || | |||| ||  |||||||||||| |||||||||    
T  34414 cttgatgaaaatacaaatcaaaatgcgtattatatat 34378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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