View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7383_high_2 (Length: 665)
Name: NF7383_high_2
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7383_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Original strand, 48076721 - 48077356
Alignment:
| Q |
18 |
caagaagagttttggtgactggtacaggaccgttaggttgtgtcccagcagaattagctcagcatagcagaaatggcgaatgttatgcagaattgcagga |
117 |
Q |
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| T |
48076721 |
caagaagagttttggtgactggtacaggaccgttaggctgtgtcccagcagaattagctcagcatagcagaaatggcgaatgttatgcagaattgcagga |
48076820 |
T |
|
| Q |
118 |
agctgccaacttgttcaaccctcaactcgttgacttattgggtcaactcaactctgaaattggttctgatgtctttatttctgcaaatgcctttgcaatg |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48076821 |
agctgccaatttgttcaaccctcaactcgttgacttattgggtcaactcaactctgaaattggttctgatgtctttatttctgcaaatgcctttgcaatg |
48076920 |
T |
|
| Q |
218 |
aatatggatttcattggtaatccagaagcatacggtatatatatgtccttcaacctcactttttattgtaccgtatttctaacatacacnnnnnnnnnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48076921 |
aatatggatttcattggtaatccagaagcatacggtatatacatgtccttcaacctcactttttattgtaccgtatttctaatatacac-----attttt |
48077015 |
T |
|
| Q |
318 |
nnnnnnnnnnnaagagactaacaactaaattcacataaactaaatacaaatataacaaacatatcaaatcggtcttttacgatgtgaacttaaccatgga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48077016 |
attttattttaaagagactaacaactaaattcacataaactaaatacaaatataacaaacatatcaaatcggtcttttacgatgtgaacttcaccatgga |
48077115 |
T |
|
| Q |
418 |
tattcctgaattttaatgggtaacaaatatttcaaagactaaatggagaatgaaactgggtgaaatttggaaaatattggtgtgagaccatatttaattt |
517 |
Q |
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| T |
48077116 |
tattcctgaattttaatgggtaacaaatatttcaaagactaaatggagaatgaaactgggtgaaatttggaaaatattggtgt--gaccatatttaattt |
48077213 |
T |
|
| Q |
518 |
tcccatcgacatacatatcatatcatgagtataaagtggaaataaataatttactctgtcc------aatccaaatccaaatgaagccaccacttgcaga |
611 |
Q |
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| T |
48077214 |
tcccatcgacatacatatcatatcatgagtataaagtggaaataaataatttactctgtccaatccaaatccaaatccaaatgaagccaccacttgcaga |
48077313 |
T |
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| Q |
612 |
tcacgttgaatggggaaaacagtttccagggaccacacttcat |
654 |
Q |
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| T |
48077314 |
tcacgttgaatggggaaaacagtttccaggaaccacacttcat |
48077356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 6340951 - 6340897
Alignment:
| Q |
18 |
caagaagagttttggtgactggtacaggaccgttaggttgtgtcccagcagaatt |
72 |
Q |
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||||||||||||||||||| || || ||||| ||||||||||| ||||||||||| |
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| T |
6340951 |
caagaagagttttggtgacaggaacgggaccattaggttgtgtaccagcagaatt |
6340897 |
T |
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