View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7383_high_9 (Length: 276)
Name: NF7383_high_9
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7383_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 265
Target Start/End: Complemental strand, 50709436 - 50709187
Alignment:
| Q |
21 |
atcggtaacatccgacaaacacagtgatgcaagcagttaaaacaacatttaaatttggatctactttcaaaacaagtggtgctaaggttaatcctgcggc |
120 |
Q |
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| T |
50709436 |
atcggtaacatccgacaaacacagtgatgcaagcagttaaaacaacatttaaatttggatctactttcaaaacaagcggtgctaaggttaatcctgcggc |
50709337 |
T |
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| Q |
121 |
aacatagaaaatgacattaatatgaagcacattactattacattgcaagagtatgaactgaaacaataaaat-----aaaaatcactnnnnnnnnnnnng |
215 |
Q |
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| T |
50709336 |
aacatagaaaatgacattaatatgaagcacattactattacattgcaagagtatgaactgaaacaataaaataaaataaaattcactaaaaaaaaaaaag |
50709237 |
T |
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| Q |
216 |
taagacaaacctaataaagccaaattagcaattcgttccgtgttcttcat |
265 |
Q |
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| T |
50709236 |
taagacaaacctaataaagccaaattagcaattcgttccgtgttcttcat |
50709187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 841007 - 841089
Alignment:
| Q |
29 |
catccgacaaacacagtgatgcaagcagttaaaacaacatttaaatttggatctactttcaaaacaagtggtgctaaggttaa |
111 |
Q |
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| T |
841007 |
catcccacaaacacagtgatgcaagcagtcaagataacatttagatttggatttatcttcacaacaagaggtgctaaggttaa |
841089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 38974065 - 38974117
Alignment:
| Q |
59 |
aaaacaacatttaaatttggatctactttcaaaacaagtggtgctaaggttaa |
111 |
Q |
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| T |
38974065 |
aaaacaacatttaactgtggatctactttcacaacaagtgatgctaaggttaa |
38974117 |
T |
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