View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7383_low_11 (Length: 267)
Name: NF7383_low_11
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7383_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 40680944 - 40681072
Alignment:
| Q |
15 |
cactttgcaagagaaacaagatannnnnnnctcaaaagagagatggaaaagaaagaacacaagagacagaatttgtttaattgagtggtattccaacgtc |
114 |
Q |
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| T |
40680944 |
cactttgcaagagaaacaagatatttttttctcaaaagagagatggaaaagaaagaacacaagagacagaatttgttgaattgagtggtattccaacgtc |
40681043 |
T |
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| Q |
115 |
taaagtagagaatctgcatctgagacaca |
143 |
Q |
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| T |
40681044 |
taaagtagagaatctgcatctgagacaca |
40681072 |
T |
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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 40681120 - 40681182
Alignment:
| Q |
191 |
catatgtatatttgtacacactcacatgtcactactcactcactacactctacctctatcagtat |
255 |
Q |
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| T |
40681120 |
catatgtatatttgtacac--tcacatgtcactactcactcactacactctacctctatcagtat |
40681182 |
T |
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