View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7383_low_13 (Length: 248)

Name: NF7383_low_13
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7383_low_13
NF7383_low_13
[»] chr1 (6 HSPs)
chr1 (17-231)||(9109058-9109271)
chr1 (17-61)||(7482033-7482077)
chr1 (17-59)||(47115489-47115531)
chr1 (17-61)||(28242622-28242666)
chr1 (17-61)||(37168612-37168656)
chr1 (29-65)||(41136139-41136175)
[»] chr8 (1 HSPs)
chr8 (18-74)||(15691105-15691161)
[»] chr6 (1 HSPs)
chr6 (17-53)||(2972751-2972787)
[»] chr7 (1 HSPs)
chr7 (36-74)||(26639650-26639688)
[»] chr5 (1 HSPs)
chr5 (18-59)||(27637425-27637466)
[»] chr2 (1 HSPs)
chr2 (20-61)||(7451438-7451479)
[»] chr4 (2 HSPs)
chr4 (17-61)||(379697-379741)
chr4 (17-61)||(41964730-41964774)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 9109271 - 9109058
Alignment:
Q  17 gatacttgctcaacgaatttaaattttattgatgtgagatttggagttatagaattcaaaacgtatttcccttccaactcgttaaggggctgcaatcaat 116  Q
    |||||||||||||  ||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9109271 gatacttgctcaagaaatctaaattttattgatataagatttggagttatagaattcaaaacgtatttcccttccaactcgttaaggggctacaatcaat 9109172  T
Q  117 ttctctatctcttatattgactacgaatataacatgatttcaatttcagacccagacagacaattgccttcaataaatgtttttatgctcagcagttcat 216  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9109171 ttctctatctcttatattgactaggaatacaacat-atttcaatttcagacccagacagacaattgccttcaaaaaatgtttttatgctcaacagttcat 9109073  T
Q  217 cattttgacattaca 231  Q
    ||||||||| |||||    
T  9109072 cattttgaccttaca 9109058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 7482077 - 7482033
Alignment:
Q  17 gatacttgctcaacgaatttaaattttattgatgtgagatttgga 61  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  7482077 gatacttgctccacgaatttaaattttattgatgtgaggtttgga 7482033  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 47115489 - 47115531
Alignment:
Q  17 gatacttgctcaacgaatttaaattttattgatgtgagatttg 59  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||    
T  47115489 gatacttgctccacgaatctaaattttattgatgtgagttttg 47115531  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 28242622 - 28242666
Alignment:
Q  17 gatacttgctcaacgaatttaaattttattgatgtgagatttgga 61  Q
    ||||||||||| |||||| ||||||| ||||||||||| ||||||    
T  28242622 gatacttgctccacgaatctaaatttcattgatgtgaggtttgga 28242666  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 37168612 - 37168656
Alignment:
Q  17 gatacttgctcaacgaatttaaattttattgatgtgagatttgga 61  Q
    ||||||||||| |||||| ||||||| ||||||| ||||||||||    
T  37168612 gatacttgctctacgaatctaaatttcattgatgcgagatttgga 37168656  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 41136139 - 41136175
Alignment:
Q  29 acgaatttaaattttattgatgtgagatttggagtta 65  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  41136139 acgaatctaaatttcattgatgtgagatttggagtta 41136175  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 15691105 - 15691161
Alignment:
Q  18 atacttgctcaacgaatttaaattttattgatgtgagatttggagttatagaattca 74  Q
    |||||||||| |||||| ||||||| ||||||||||| ||||||||||  |||||||    
T  15691105 atacttgctccacgaatctaaatttcattgatgtgaggtttggagttaccgaattca 15691161  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 2972787 - 2972751
Alignment:
Q  17 gatacttgctcaacgaatttaaattttattgatgtga 53  Q
    |||||||||||||||||||||||||| ||||||||||    
T  2972787 gatacttgctcaacgaatttaaatttcattgatgtga 2972751  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 26639650 - 26639688
Alignment:
Q  36 taaattttattgatgtgagatttggagttatagaattca 74  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  26639650 taaattttattgatgtgagatttggagttaccgaattca 26639688  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 27637466 - 27637425
Alignment:
Q  18 atacttgctcaacgaatttaaattttattgatgtgagatttg 59  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    
T  27637466 atacttgctccacgaatttaaatttcattgatgtgaggtttg 27637425  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 7451438 - 7451479
Alignment:
Q  20 acttgctcaacgaatttaaattttattgatgtgagatttgga 61  Q
    |||||||| |||||| ||||||| ||||||||||||||||||    
T  7451438 acttgctccacgaatctaaatttcattgatgtgagatttgga 7451479  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 379697 - 379741
Alignment:
Q  17 gatacttgctcaacgaatttaaattttattgatgtgagatttgga 61  Q
    ||||||||||| |||||| ||||||| ||||||||||| ||||||    
T  379697 gatacttgctccacgaatctaaatttcattgatgtgaggtttgga 379741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 41964730 - 41964774
Alignment:
Q  17 gatacttgctcaacgaatttaaattttattgatgtgagatttgga 61  Q
    ||||||||||| |||||| ||||||| ||||||||||| ||||||    
T  41964730 gatacttgctccacgaatctaaatttcattgatgtgaggtttgga 41964774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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