View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7383_low_15 (Length: 233)

Name: NF7383_low_15
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7383_low_15
NF7383_low_15
[»] chr8 (1 HSPs)
chr8 (81-215)||(14055679-14055814)
[»] chr5 (3 HSPs)
chr5 (115-154)||(30873081-30873120)
chr5 (115-156)||(14513011-14513052)
chr5 (125-154)||(35476637-35476666)
[»] chr4 (2 HSPs)
chr4 (118-153)||(55323064-55323099)
chr4 (122-154)||(2554212-2554244)
[»] chr3 (4 HSPs)
chr3 (122-165)||(11076385-11076428)
chr3 (122-165)||(11076888-11076931)
chr3 (122-165)||(11077043-11077086)
chr3 (115-156)||(47495856-47495897)
[»] chr1 (2 HSPs)
chr1 (123-161)||(32544047-32544085)
chr1 (122-154)||(28773095-28773127)
[»] chr7 (4 HSPs)
chr7 (122-154)||(33645317-33645349)
chr7 (123-159)||(36284642-36284678)
chr7 (122-154)||(38318952-38318984)
chr7 (122-154)||(48047006-48047038)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 81 - 215
Target Start/End: Complemental strand, 14055814 - 14055679
Alignment:
Q  81 tctacatttgactcattaacttttctt-gacaagagactcactaacttgtgccttaaggacacaagttagcattttctttataatatttgaagctcacac 179  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14055814 tctacatttgactcaataacttttttttgacaagagactcactaacttgtgccttaaggacacaagttagcattttctttataatatttgaagctcacac 14055715  T
Q  180 acggtctttgtggtatggtatcgagttatgatacat 215  Q
    ||||||||||||||||||||||||||||||||||||    
T  14055714 acggtctttgtggtatggtatcgagttatgatacat 14055679  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 30873081 - 30873120
Alignment:
Q  115 gactcactaacttgtgccttaaggacacaagttagcattt 154  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  30873081 gactcattaacttgtgccttaagggcacaagttagcattt 30873120  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 14513011 - 14513052
Alignment:
Q  115 gactcactaacttgtgccttaaggacacaagttagcattttc 156  Q
    |||||| |||||||||||||| | ||||||||||||||||||    
T  14513011 gactcattaacttgtgccttatgtacacaagttagcattttc 14513052  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 35476637 - 35476666
Alignment:
Q  125 cttgtgccttaaggacacaagttagcattt 154  Q
    ||||||||||||||||||||||||||||||    
T  35476637 cttgtgccttaaggacacaagttagcattt 35476666  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 55323064 - 55323099
Alignment:
Q  118 tcactaacttgtgccttaaggacacaagttagcatt 153  Q
    ||||||||||||||||||||| ||||||||||||||    
T  55323064 tcactaacttgtgccttaagggcacaagttagcatt 55323099  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 2554212 - 2554244
Alignment:
Q  122 taacttgtgccttaaggacacaagttagcattt 154  Q
    ||||||||||||||||| |||||||||||||||    
T  2554212 taacttgtgccttaagggcacaagttagcattt 2554244  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 11076428 - 11076385
Alignment:
Q  122 taacttgtgccttaaggacacaagttagcattttctttataata 165  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||    
T  11076428 taacttgtgccttaacgacacaagttagcatttccttaataata 11076385  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 11076931 - 11076888
Alignment:
Q  122 taacttgtgccttaaggacacaagttagcattttctttataata 165  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||    
T  11076931 taacttgtgccttaacgacacaagttagcatttccttaataata 11076888  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 11077043 - 11077086
Alignment:
Q  122 taacttgtgccttaaggacacaagttagcattttctttataata 165  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||    
T  11077043 taacttgtgccttaacgacacaagttagcatttccttaataata 11077086  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 47495856 - 47495897
Alignment:
Q  115 gactcactaacttgtgccttaaggacacaagttagcattttc 156  Q
    |||||| |||||||||| ||||| ||||||||||||||||||    
T  47495856 gactcattaacttgtgctttaagcacacaagttagcattttc 47495897  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 32544047 - 32544085
Alignment:
Q  123 aacttgtgccttaaggacacaagttagcattttctttat 161  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  32544047 aacttgtgccttaaagacacaagttagcattttccttat 32544085  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 28773095 - 28773127
Alignment:
Q  122 taacttgtgccttaaggacacaagttagcattt 154  Q
    ||||||||||||||||| |||||||||||||||    
T  28773095 taacttgtgccttaagggcacaagttagcattt 28773127  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 33645317 - 33645349
Alignment:
Q  122 taacttgtgccttaaggacacaagttagcattt 154  Q
    ||||||||||||||||| |||||||||||||||    
T  33645317 taacttgtgccttaagggcacaagttagcattt 33645349  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 36284678 - 36284642
Alignment:
Q  123 aacttgtgccttaaggacacaagttagcattttcttt 159  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  36284678 aacttgtgccttaaagacacaagttaacattttcttt 36284642  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 38318984 - 38318952
Alignment:
Q  122 taacttgtgccttaaggacacaagttagcattt 154  Q
    ||||||||||||||||||||||||||| |||||    
T  38318984 taacttgtgccttaaggacacaagttaacattt 38318952  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 48047006 - 48047038
Alignment:
Q  122 taacttgtgccttaaggacacaagttagcattt 154  Q
    ||||||||||||||||| |||||||||||||||    
T  48047006 taacttgtgccttaagggcacaagttagcattt 48047038  T

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