View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7383_low_16 (Length: 230)
Name: NF7383_low_16
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7383_low_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 13311964 - 13312182
Alignment:
| Q |
11 |
atggacatcatgggccctgttagacaatctttatctatatgacataaccaccctaattgcatcattaagtccgcagacaagcaggtactgtggtcaatgt |
110 |
Q |
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| T |
13311964 |
atggacatcattggccctgttagacaatctttatctatatcacataaccaccctaattgcatcattaagtccgcagacaagcaggtactgtggtcaatgt |
13312063 |
T |
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| Q |
111 |
gtctacatctcttccaattatgaatatctcttcgagaatcttaataaattgatgtctctcttatgatccaattacaagggaaggttaatttattctaacc |
210 |
Q |
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| T |
13312064 |
gtctacat-tcttccaattatgaatatctcttcgagaatcttaataaattgatatctctcttatgatccaattacaagggaaggttaatttattccaacc |
13312162 |
T |
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| Q |
211 |
tgctgctgaattcctgccaa |
230 |
Q |
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| T |
13312163 |
tgctgctgaattcctgccaa |
13312182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 12908179 - 12907953
Alignment:
| Q |
11 |
atggacatcatgggccctgttagacaatctttatctatatgacataaccaccctaattgcatcattaagtccgcagacaagcaggtactgtggtcaatgt |
110 |
Q |
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| T |
12908179 |
atggacatcattggccctgttagacaatctcaatctgtgtcacataaccaccctaattgcatcgttaagtctacagacaagcaggtactgtggtcaaagt |
12908080 |
T |
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| Q |
111 |
gtctacatctcttccaattatgaatatctcttcgagaatcttaataaattgatgtctctcttatgatcc----aattacaagg---gaaggttaatttat |
203 |
Q |
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| T |
12908079 |
ttctacctctcatcctattatgaatatcccttcgagtatcttaataaattgctgtctctcttatgatccttaaaattacagggcaagaaggttaatttat |
12907980 |
T |
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| Q |
204 |
tctaacctgctgctgaattcctgccaa |
230 |
Q |
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| T |
12907979 |
tccaacctgctgctgaattcctgccaa |
12907953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 1566229 - 1566263
Alignment:
| Q |
194 |
gttaatttattctaacctgctgctgaattcctgcc |
228 |
Q |
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| T |
1566229 |
gttaatttattccaacctgctgctgaattcctgcc |
1566263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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