View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7383_low_20 (Length: 211)

Name: NF7383_low_20
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7383_low_20
NF7383_low_20
[»] chr6 (15 HSPs)
chr6 (18-174)||(18690419-18690575)
chr6 (138-188)||(19411592-19411642)
chr6 (108-189)||(30536388-30536469)
chr6 (108-172)||(24626222-24626286)
chr6 (108-183)||(8147619-8147693)
chr6 (108-183)||(18076112-18076187)
chr6 (109-189)||(35070710-35070791)
chr6 (106-190)||(6016452-6016536)
chr6 (108-172)||(30536637-30536701)
chr6 (108-189)||(6909951-6910033)
chr6 (125-171)||(9763392-9763438)
chr6 (136-190)||(14164032-14164085)
chr6 (128-181)||(6538435-6538488)
chr6 (109-154)||(9559621-9559666)
chr6 (123-183)||(29754173-29754233)
[»] chr7 (13 HSPs)
chr7 (47-190)||(20428376-20428518)
chr7 (92-183)||(46078063-46078155)
chr7 (47-170)||(7467537-7467653)
chr7 (122-182)||(4970881-4970941)
chr7 (123-178)||(48140137-48140192)
chr7 (129-183)||(21568728-21568782)
chr7 (108-189)||(45806556-45806637)
chr7 (116-176)||(33266571-33266631)
chr7 (150-188)||(3308373-3308411)
chr7 (116-190)||(33128666-33128740)
chr7 (123-176)||(420283-420336)
chr7 (103-183)||(9210544-9210624)
chr7 (123-183)||(23989578-23989638)
[»] chr8 (14 HSPs)
chr8 (108-181)||(1058153-1058226)
chr8 (116-183)||(12976129-12976196)
chr8 (108-171)||(25930633-25930696)
chr8 (138-189)||(38750268-38750319)
chr8 (123-181)||(32975978-32976036)
chr8 (108-176)||(16825616-16825684)
chr8 (123-183)||(38353266-38353325)
chr8 (104-178)||(4526333-4526405)
chr8 (108-183)||(14956374-14956449)
chr8 (108-183)||(35534690-35534763)
chr8 (108-179)||(42043424-42043495)
chr8 (108-170)||(12497310-12497372)
chr8 (122-172)||(29168145-29168195)
chr8 (108-189)||(10758335-10758416)
[»] chr2 (18 HSPs)
chr2 (92-183)||(41407217-41407308)
chr2 (47-190)||(10258585-10258723)
chr2 (108-190)||(42659230-42659312)
chr2 (108-183)||(42868540-42868615)
chr2 (104-190)||(32592496-32592582)
chr2 (108-182)||(45229429-45229503)
chr2 (116-189)||(13325480-13325553)
chr2 (107-181)||(22971596-22971669)
chr2 (108-189)||(12464552-12464633)
chr2 (123-183)||(26201944-26202005)
chr2 (92-172)||(15757722-15757802)
chr2 (107-183)||(31561831-31561907)
chr2 (123-182)||(15305574-15305633)
chr2 (94-180)||(33319878-33319964)
chr2 (144-190)||(11863840-11863886)
chr2 (108-170)||(41812169-41812231)
chr2 (156-190)||(44255468-44255502)
chr2 (122-183)||(3311960-3312021)
[»] chr4 (17 HSPs)
chr4 (108-183)||(43505872-43505947)
chr4 (108-188)||(19494825-19494905)
chr4 (108-172)||(31076465-31076529)
chr4 (122-183)||(22030120-22030180)
chr4 (108-181)||(41336679-41336751)
chr4 (108-188)||(50681168-50681248)
chr4 (108-183)||(403443-403518)
chr4 (116-183)||(31851370-31851437)
chr4 (116-170)||(25904297-25904351)
chr4 (126-176)||(33587051-33587101)
chr4 (108-189)||(17204048-17204129)
chr4 (140-189)||(24169171-24169220)
chr4 (123-183)||(15173394-15173454)
chr4 (123-183)||(15177296-15177356)
chr4 (108-176)||(42404077-42404145)
chr4 (108-156)||(43372048-43372096)
chr4 (108-176)||(54069496-54069564)
[»] chr3 (15 HSPs)
chr3 (108-183)||(24684902-24684977)
chr3 (109-190)||(46778307-46778388)
chr3 (108-183)||(30956705-30956780)
chr3 (108-183)||(30972517-30972592)
chr3 (116-183)||(35959543-35959610)
chr3 (103-181)||(12862321-12862399)
chr3 (126-183)||(20880393-20880450)
chr3 (108-180)||(583965-584037)
chr3 (122-183)||(37689149-37689210)
chr3 (124-176)||(18405927-18405979)
chr3 (108-183)||(20170439-20170514)
chr3 (123-198)||(29520573-29520647)
chr3 (127-181)||(19983698-19983752)
chr3 (109-183)||(53789541-53789615)
chr3 (124-183)||(1508675-1508735)
[»] chr1 (17 HSPs)
chr1 (117-189)||(17830064-17830136)
chr1 (117-183)||(37473315-37473381)
chr1 (139-183)||(5741578-5741622)
chr1 (108-187)||(14331701-14331780)
chr1 (108-183)||(27976511-27976586)
chr1 (117-176)||(49938655-49938714)
chr1 (129-183)||(33541808-33541862)
chr1 (110-183)||(29904676-29904748)
chr1 (108-180)||(41195272-41195345)
chr1 (139-183)||(5720897-5720941)
chr1 (160-198)||(1829075-1829113)
chr1 (108-158)||(30582027-30582077)
chr1 (116-170)||(37769747-37769801)
chr1 (108-158)||(47432037-47432087)
chr1 (92-157)||(30581744-30581808)
chr1 (117-181)||(30191909-30191973)
chr1 (126-190)||(44932029-44932093)
[»] chr5 (10 HSPs)
chr5 (108-178)||(35445975-35446046)
chr5 (117-183)||(3735579-3735645)
chr5 (108-176)||(42500304-42500372)
chr5 (123-180)||(16458072-16458129)
chr5 (127-187)||(25461744-25461804)
chr5 (123-178)||(7999127-7999182)
chr5 (108-179)||(10639873-10639944)
chr5 (108-171)||(3932764-3932828)
chr5 (92-148)||(13697822-13697878)
chr5 (104-148)||(14932241-14932285)
[»] scaffold0012 (1 HSPs)
scaffold0012 (123-183)||(207675-207735)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 18690575 - 18690419
Alignment:
Q  18 ataaccacccttgttttttcagcttattattattttcataagttctctaagataacttctgaaagtcacttatcacttatagtatatataaaaaacagtt 117  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18690575 ataactacccttgttttttaagcttattattattttcataagttctctaagataacttctgaaagtcacttatcacttatagcatatataaaaaacagtt 18690476  T
Q  118 taaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgc 174  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18690475 taaatttattttatcctttgctataaaagtaccttatgtaaccttatacataagcgc 18690419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 19411592 - 19411642
Alignment:
Q  138 ctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagt 188  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||||||    
T  19411592 ctataaaactaccttatgtaaccttatacataagagcttattatgagaagt 19411642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 30536469 - 30536388
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtg 189  Q
    ||||||| |||||  |||||||||| |||||||||| |||| |||||| || |||||||||||||  ||||||||| |||||    
T  30536469 aaaaacaatttaacattattttatcatttgctataataatagcttatgcaaacttatacataagcttttatcatgataagtg 30536388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 24626286 - 24626222
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagc 172  Q
    ||||||| ||||| ||| ||||||||||| ||||| ||||| ||||||||| |||||||||||||    
T  24626286 aaaaacaatttaactttgttttatcctttcctatagaaatagcttatgtaagcttatacataagc 24626222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 8147693 - 8147619
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| || || ||||||||||| ||||||||||||||| ||||||| | ||||| | ||||||||||||||||    
T  8147693 aaaaacaattcaactttattttatcttttgctataaaaatagcttatgt-agcttatgcttaagcgcttatcatga 8147619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 18076187 - 18076112
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| |||||  ||||||| || ||||||||||||||| |||||| || |||||||||||| |||||| ||||    
T  18076187 aaaaacaatttaaccttattttctcttttgctataaaaataacttatgcaagcttatacataagtgcttattatga 18076112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 35070710 - 35070791
Alignment:
Q  109 aaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttata-cataagcgcttatcatgagaagtg 189  Q
    |||||| ||| | ||||||||||| ||| ||||||||||| ||||||||| |||||| ||| || ||||||||||| |||||    
T  35070710 aaaacaattttattttattttatctttttctataaaaatagcttatgtaagcttatagcattagtgcttatcatgacaagtg 35070791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 6016452 - 6016536
Alignment:
Q  106 taaaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtgt 190  Q
    ||||||||| || || ||||||||||| |||| ||| |||||| |||||| ||  ||||| ||||||||||||| ||| ||||||    
T  6016452 taaaaaacaattgaactttattttatcttttgttatgaaaataacttatgcaagattatatataagcgcttatcgtgataagtgt 6016536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 30536637 - 30536701
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagc 172  Q
    ||||||| |||||  |||| ||||| ||||||||||||||| |||||| || |||||||||||||    
T  30536637 aaaaacaatttaacgttatcttatcttttgctataaaaatagcttatgcaagcttatacataagc 30536701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 6909951 - 6910033
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgc-tataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtg 189  Q
    ||||||| ||||| |||||||| | |||| | |||| ||||| |||||||||  |||||||||||| |||||||||| |||||    
T  6909951 aaaaacaatttaactttatttttttcttttcctatagaaatagcttatgtaagtttatacataagcacttatcatgataagtg 6910033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 9763438 - 9763392
Alignment:
Q  125 attttatcctttgctataaaaataccttatgtaaccttatacataag 171  Q
    |||||||| |||| |||||||||| ||||||||| ||||||||||||    
T  9763438 attttatcttttgttataaaaatatcttatgtaaacttatacataag 9763392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 14164085 - 14164032
Alignment:
Q  136 tgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtgt 190  Q
    ||||||||||||| ||||||||| |||||||||||| | ||||||||| ||||||    
T  14164085 tgctataaaaatatcttatgtaagcttatacataag-gattatcatgataagtgt 14164032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 6538488 - 6538435
Alignment:
Q  128 ttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcat 181  Q
    ||||| ||||||| |||| || |||||| || ||||||||||||||||||||||    
T  6538488 ttatcttttgctaaaaaactaacttatgcaagcttatacataagcgcttatcat 6538435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 9559621 - 9559666
Alignment:
Q  109 aaaacagtttaaatttattttatcctttgctataaaaataccttat 154  Q
    |||||| ||||||||||||||||| ||||||||| ||||| |||||    
T  9559621 aaaacaatttaaatttattttatcttttgctatagaaataacttat 9559666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 29754173 - 29754233
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||| |||| ||  |||||| |||||| || || |||||||||||||||||||||    
T  29754173 ttattttatcttttgttactaaaatagcttatgcaagctaatacataagcgcttatcatga 29754233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 20428518 - 20428376
Alignment:
Q  47 ttattttcataagttctctaagataacttctgaaagtcacttatcacttatagtatatat--aaaaaacagtttaaatttattttatcctttgctataaa 144  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||   |||||| |||||   |||||| | || || ||||||||||| ||| | |||||    
T  20428518 ttattttcgtaagttccctaagataacttctgaaaatcacttat---ttatagcatatacgaaaaaaaaaattaaactttattttatcatttccaataaa 20428422  T
Q  145 aataccttatgtaaccttatacataagcgcttatcatgagaagtgt 190  Q
    |  |||||||||||||||||||||||||||||||||||||||||||    
T  20428421 accaccttatgtaaccttatacataagcgcttatcatgagaagtgt 20428376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 46078155 - 46078063
Alignment:
Q  92 acttatagtatatata-aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||| ||||||| ||||||| ||||| ||| ||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  46078155 acttatagcatatatacaaaaacaatttaactttgttttatctttttctataaaaataacttatgtaagcttatacataagcgcttatcatga 46078063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 170
Target Start/End: Complemental strand, 7467653 - 7467537
Alignment:
Q  47 ttattttcataagttctctaagataacttctgaaagtcacttatcacttatagtatatataaaaaacagtttaaatttattttatcctttgctataaaaa 146  Q
    |||||||||||||||| ||||||||||||||||||        |||||||||| ||||| |||||||| ||||||||||||| ||| |||| |||||||     
T  7467653 ttattttcataagttcactaagataacttctgaaa--------tcacttatagcatatacaaaaaacaatttaaatttatttgatcatttgttataaaac 7467562  T
Q  147 taccttatgt-aaccttatacataa 170  Q
    || | ||||| |||||| |||||||    
T  7467561 tatcatatgtaaaccttgtacataa 7467537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 4970881 - 4970941
Alignment:
Q  122 tttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatg 182  Q
    ||||||||||| ||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  4970881 tttattttatcttttgctatagaaatagcttatgtaagcttatacataaccgcttatcatg 4970941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 48140192 - 48140137
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttat 178  Q
    |||||||||| |||| |||||||||| |||||| || |||||||||||||||||||    
T  48140192 ttattttatcttttgttataaaaatagcttatgcaagcttatacataagcgcttat 48140137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 21568728 - 21568782
Alignment:
Q  129 tatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||| ||||||||||||||| |||||| || |||||||||||| |||||||||||    
T  21568728 tatcttttgctataaaaatagcttatgcaagcttatacataagtgcttatcatga 21568782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 45806556 - 45806637
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtg 189  Q
    ||||||| |||||  ||||||| || ||||||||||| ||| |||||| || |||||||||||| |||||| |||| |||||    
T  45806556 aaaaacaatttaacgttattttctcttttgctataaacatagcttatgcaagcttatacataagtgcttattatgataagtg 45806637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 33266571 - 33266631
Alignment:
Q  116 tttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgctt 176  Q
    ||||| ||||||||||||||||||||| ||||| ||| ||| | |||||||||||| ||||    
T  33266571 tttaactttattttatcctttgctatataaatagcttttgtgagcttatacataagtgctt 33266631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 3308373 - 3308411
Alignment:
Q  150 cttatgtaaccttatacataagcgcttatcatgagaagt 188  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  3308373 cttatgtaaccttatacataagcacttatcatgaaaagt 3308411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 33128740 - 33128666
Alignment:
Q  116 tttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtgt 190  Q
    ||||| |||||||||||  || ||||||||||| | || |||| ||||| ||||||| |||||||||| ||||||    
T  33128740 tttaactttattttatctctttctataaaaataacgtaagtaagcttatgcataagcacttatcatgataagtgt 33128666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 420336 - 420283
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgctt 176  Q
    |||||||||| ||||||||||| ||| |||||| || ||||||||||| |||||    
T  420336 ttattttatcttttgctataaacatagcttatgcaagcttatacataaacgctt 420283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 9210624 - 9210544
Alignment:
Q  103 atataaaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||| | |||||  | |||||||  ||| |||||||| || |||||| || |||||||||||||| |||||||||    
T  9210624 atataaaaaagaatttaacatcattttatttttttctataaaagtagcttatgcaagcttatacataagcgattatcatga 9210544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 23989578 - 23989638
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||| ||| |||||||||||  ||||| || ||||||||||||  ||||||||||    
T  23989578 ttattttatcttttactataaaaatagtttatgcaaacttatacataagaacttatcatga 23989638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 1058153 - 1058226
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcat 181  Q
    |||||||| |||| ||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  1058153 aaaaacagattaactttattttatgatttgctataaaaatagcttatgtaagcttatacataagcgcttatcat 1058226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 12976196 - 12976129
Alignment:
Q  116 tttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||| ||||||||||  ||||||||| ||||| ||||||| | ||||||||||||||||||||||||    
T  12976196 tttaactttattttatattttgctatagaaatagcttatgtgagcttatacataagcgcttatcatga 12976129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 25930633 - 25930696
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataag 171  Q
    ||||||| ||||| ||||||| ||||||| ||||| ||||| ||||||||| ||||||||||||    
T  25930633 aaaaacattttaattttatttcatcctttcctatagaaatagcttatgtaagcttatacataag 25930696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 38750319 - 38750268
Alignment:
Q  138 ctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtg 189  Q
    ||||||||||| |||||| || |||||||||||||||||||||||| |||||    
T  38750319 ctataaaaatagcttatgcaagcttatacataagcgcttatcatgataagtg 38750268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 32976036 - 32975978
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcat 181  Q
    |||||||||| ||||||||||||||| |||||| || |||||| |||||| ||||||||    
T  32976036 ttattttatcttttgctataaaaatagcttatgcaagcttatatataagcacttatcat 32975978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 16825616 - 16825684
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgctt 176  Q
    ||||||| |||||  |||||||||||||| |||||| |||| |||||| ||  ||||||||||||||||    
T  16825616 aaaaacaatttaacattattttatcctttactataagaatagcttatgcaaggttatacataagcgctt 16825684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 38353325 - 38353266
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||| ||||| ||||||||| |||||| || |||||||||||||| |||||||||    
T  38353325 ttattttatcttttgc-ataaaaatagcttatgcaagcttatacataagcgattatcatga 38353266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 4526333 - 4526405
Alignment:
Q  104 tataaaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttat 178  Q
    ||||||||||| ||||| ||||||||||  ||||||||| |||||  |||||||| | |||||| ||||||||||    
T  4526333 tataaaaaacaatttaactttattttat--tttgctatagaaatagtttatgtaagcctatacacaagcgcttat 4526405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 14956374 - 14956449
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| |||||  |||||| ||| ||| | ||||||||| |||||| || |||||||||||| |||||||||||    
T  14956374 aaaaacaatttaatgttatttcatcttttacaataaaaatagcttatgcaagcttatacataagtgcttatcatga 14956449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 35534690 - 35534763
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| ||||| ||||||||||| ||| ||||||||||| ||||||||| ||||| ||| ||||||||| ||||    
T  35534690 aaaaacaatttaactttattttatctttt-ctataaaaatatcttatgtaagcttatgcat-agcgcttataatga 35534763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 42043424 - 42043495
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatc 179  Q
    ||||||| ||||| |  |||||||| ||||||||| ||||| | ||||||| |||||||||||| |||||||    
T  42043424 aaaaacaatttaactgcattttatcttttgctatagaaatagcatatgtaagcttatacataagtgcttatc 42043495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 12497310 - 12497372
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataa 170  Q
    |||||||  |||| ||||||||||| ||||||||||||||  |||||| || |||||||||||    
T  12497310 aaaaacaagttaactttattttatcttttgctataaaaatggcttatgcaagcttatacataa 12497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 29168145 - 29168195
Alignment:
Q  122 tttattttatcctttgctataaaaataccttatgtaaccttatacataagc 172  Q
    ||||||||||| ||||||||| ||||| ||||||| | |||||||||||||    
T  29168145 tttattttatcttttgctatagaaatagcttatgtgagcttatacataagc 29168195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 10758335 - 10758416
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtg 189  Q
    ||||||| ||||| ||||||||||  ||||||||| |||||  ||| || | ||||||||||| | |||||||||| |||||    
T  10758335 aaaaacaatttaactttattttatgatttgctatagaaatagtttacgtgagcttatacataatcacttatcatgataagtg 10758416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 41407308 - 41407217
Alignment:
Q  92 acttatagtatatataaaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||| ||||| |||||||| ||||| ||||||||||| |||| || | ||||| ||||||||| |||||||||||| |||||||||||    
T  41407308 acttatagcatatacaaaaaacaatttaactttattttatcttttggtacagaaatagcttatgtaagcttatacataagtgcttatcatga 41407217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 10258723 - 10258585
Alignment:
Q  47 ttattttcataagttctctaagataacttctgaaagtcacttatcacttatagtatatataaaaaa--cagtttaaatttattttatcctttgctataaa 144  Q
    ||||||||| |||||| | ||||||||||||||||       ||||||||||| || || ||||||  || || || ||||||||||| ||| | | |||    
T  10258723 ttattttcagaagttcccaaagataacttctgaaa-------atcacttatagcatctacaaaaaaaacaattgaactttattttatcatttcccacaaa 10258631  T
Q  145 aataccttatgtaaccttatacataagcgcttatcatgagaagtgt 190  Q
    | |||||||||||||||||||||||||| ||| |||||||||||||    
T  10258630 actaccttatgtaaccttatacataagcacttgtcatgagaagtgt 10258585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 42659230 - 42659312
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtgt 190  Q
    ||||||| ||| | ||||||||| | ||| | ||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  42659230 aaaaacaatttcactttattttaccattttccataaaaatagcttatgtaagcttatacataagcgcttatcatgataagtgt 42659312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 42868540 - 42868615
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| ||||| ||||||||||| ||| |||| |||||| ||||||||| ||||| ||||||||| ||||||||    
T  42868540 aaaaacaatttaactttattttatctttttctatgaaaatagcttatgtaaacttatgcataagcgcctatcatga 42868615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 32592582 - 32592496
Alignment:
Q  104 tataaaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtgt 190  Q
    |||| |||||| |||||  |||||||||| ||| |||||||||||  ||||| || ||||||||||||||||||| |||| ||||||    
T  32592582 tatacaaaacaatttaacattattttatctttttctataaaaatagtttatgcaagcttatacataagcgcttataatgataagtgt 32592496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 45229503 - 45229429
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatg 182  Q
    ||||||| |||||  | |||||||| ||||||||| ||||| ||||||||| ||||||||||||| |||||||||    
T  45229503 aaaaacaatttaacctcattttatcgtttgctatagaaatagcttatgtaaacttatacataagcacttatcatg 45229429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 13325553 - 13325480
Alignment:
Q  116 tttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtg 189  Q
    ||||| ||||||||||| ||| |||||||| || ||||||| |||| ||||||||| ||||| |||||||||||    
T  13325553 tttaactttattttatcattttctataaaactagcttatgttacctcatacataagtgcttaacatgagaagtg 13325480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 22971596 - 22971669
Alignment:
Q  107 aaaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcat 181  Q
    ||||||||| |||| ||||||||||| ||| ||||| ||||| ||||| ||| |||||||| |||||||||||||    
T  22971596 aaaaaacagattaactttattttatctttt-ctatagaaatagcttatataagcttatacacaagcgcttatcat 22971669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 12464552 - 12464633
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtg 189  Q
    ||||||| ||||| ||||||||||| ||| ||| | ||||| ||||||||| ||| |||||| || |||||||||| |||||    
T  12464552 aaaaacaatttaactttattttatctttttctacagaaatagcttatgtaagcttctacatatgcacttatcatgataagtg 12464633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 26202005 - 26201944
Alignment:
Q  123 ttattttatc-ctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||| |||||||||||||||| |||||| || |||||| ||||| |||||||||||    
T  26202005 ttattttatctctttgctataaaaatagcttatgcaagcttatatataagggcttatcatga 26201944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 15757722 - 15757802
Alignment:
Q  92 acttatagtatatataaaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagc 172  Q
    |||||||| ||||| |||||||| ||||| ||||||||||| ||| || || | ||| ||||||| | |||||||||||||    
T  15757722 acttatagcatatacaaaaaacaatttaactttattttatcattttctttagatatagcttatgtgagcttatacataagc 15757802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 31561831 - 31561907
Alignment:
Q  107 aaaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||| ||||| ||||||||||| |||  |||| | ||| ||||||||| ||||||  ||||||||||||||||    
T  31561831 aaaaaacaatttaactttattttatcatttattatagatatagcttatgtaagcttatatgtaagcgcttatcatga 31561907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 15305633 - 15305574
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatg 182  Q
    |||||||||| ||||||||||||||| |||||| || |||||||| |||| |||| ||||    
T  15305633 ttattttatcatttgctataaaaatagcttatgcaagcttatacacaagcacttaccatg 15305574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 33319878 - 33319964
Alignment:
Q  94 ttatagtatatataaaaaacagtttaaattt-attttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatca 180  Q
    |||||||||||| ||||| |||||||| ||| || ||||| ||| |||||||||||  |||||||| ||| |||||||||| ||||||    
T  33319878 ttatagtatatacaaaaa-cagtttaacttttatgttatcatttactataaaaatagtttatgtaaacttttacataagcgattatca 33319964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 11863886 - 11863840
Alignment:
Q  144 aaataccttatgtaaccttatacataagcgcttatcatgagaagtgt 190  Q
    ||||| ||||||||| ||||| |||||||||||||||||| ||||||    
T  11863886 aaatagcttatgtaagcttatgcataagcgcttatcatgacaagtgt 11863840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 41812169 - 41812231
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataa 170  Q
    ||||||| ||||| || |||||| | ||||| ||||||||| ||||||||| |||||||||||    
T  41812169 aaaaacaatttaacttcattttaccatttgccataaaaatagcttatgtaagcttatacataa 41812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 44255502 - 44255468
Alignment:
Q  156 taaccttatacataagcgcttatcatgagaagtgt 190  Q
    |||||||||||| ||||||||||||||||||||||    
T  44255502 taaccttatacagaagcgcttatcatgagaagtgt 44255468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 3312021 - 3311960
Alignment:
Q  122 tttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||||| ||||| |||||| | ||||||||  ||||||||||||| ||| ||||||    
T  3312021 tttattttatcccttgctgtaaaaacagcttatgtatgcttatacataagcacttttcatga 3311960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 43505947 - 43505872
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| |||||  |||||||||| ||||||||||||||| |||||| || |||||||||||| |||||||||||    
T  43505947 aaaaacaatttaacgttattttatcttttgctataaaaatagcttatgcaagcttatacataagtgcttatcatga 43505872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 19494905 - 19494825
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagt 188  Q
    ||||||| ||||  ||||||||||| ||||||||| || || |||||||||||||||||||| | ||||||||||| ||||    
T  19494905 aaaaacaatttagctttattttatcatttgctatagaactagcttatgtaaccttatacataggtgcttatcatgaaaagt 19494825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 31076465 - 31076529
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagc 172  Q
    |||||||||||||| |||||||||| |||||| |||||||| |||||| || |||||||||||||    
T  31076465 aaaaacagtttaaacttattttatcttttgctctaaaaatagcttatgcaagcttatacataagc 31076529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 22030180 - 22030120
Alignment:
Q  122 tttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||||||||||| ||||| ||||| ||||||| | ||||||||||||||||||||||||    
T  22030180 tttattttatccttt-ctatagaaatagcttatgtgagcttatacataagcgcttatcatga 22030120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 41336751 - 41336679
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcat 181  Q
    ||||||| ||||| ||||||||||| ||||||||||||||| |||||| || | |||||||||| |||||||||    
T  41336751 aaaaacaatttaactttattttatc-tttgctataaaaatagcttatgcaagcctatacataagtgcttatcat 41336679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 50681168 - 50681248
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagt 188  Q
    ||||||| |||||  |||||||||| | | ||||||||||| ||| ||||| ||||||||||| |||||||||||| ||||    
T  50681168 aaaaacaatttaacattattttatcttatcctataaaaatagcttttgtaagcttatacataaacgcttatcatgataagt 50681248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 403518 - 403443
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| |||||  |||||||||| |||||||||||| || |||| | || |||||| ||||||| |||||||||    
T  403518 aaaaacaatttaacgttattttatcttttgctataaaagtaacttacgcaagcttatagataagcgtttatcatga 403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 31851437 - 31851370
Alignment:
Q  116 tttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||| ||||||||||| |||| |||||||||| ||||||| | ||| |||||||  |||||||||||    
T  31851437 tttaactttattttatcatttgttataaaaatagcttatgtgagcttctacataaatgcttatcatga 31851370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 25904297 - 25904351
Alignment:
Q  116 tttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataa 170  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||| |||||| ||||    
T  25904297 tttaactttattttatcttttgctgtaaaaatagcttatgtaagcttatatataa 25904351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 33587051 - 33587101
Alignment:
Q  126 ttttatcctttgctataaaaataccttatgtaaccttatacataagcgctt 176  Q
    ||||||| || |||||||||||| |||||| || |||||||||||||||||    
T  33587051 ttttatctttcgctataaaaatagcttatgcaagcttatacataagcgctt 33587101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 17204129 - 17204048
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtg 189  Q
    ||||||| | ||| ||||||||| | ||||||||||||| | ||||||||| || | ||||||||| ||||| ||| |||||    
T  17204129 aaaaacaatataactttattttaacatttgctataaaaacagcttatgtaagctaacacataagcggttatcgtgataagtg 17204048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 24169220 - 24169171
Alignment:
Q  140 ataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtg 189  Q
    ||||||||| ||||||||| || ||||||||||||| ||||||| |||||    
T  24169220 ataaaaatagcttatgtaagctcatacataagcgctaatcatgataagtg 24169171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 15173394 - 15173454
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||| || ||||| ||| || |||||| || |||||||||| |||||||||||||    
T  15173394 ttattttatctttagctattaaagtagcttatgcaagcttatacatatgcgcttatcatga 15173454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 15177296 - 15177356
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||| || ||||| |||||| |||||| || |||||||||| | |||||||||||    
T  15177296 ttattttatctttagctattaaaatagcttatgcaagcttatacatacgtgcttatcatga 15177356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 42404077 - 42404145
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgctt 176  Q
    ||||||| |||||  |||||||||| ||||||||||||| | | |||| || |||||||||||| ||||    
T  42404077 aaaaacaatttaacattattttatcttttgctataaaaagagcgtatgcaaacttatacataagtgctt 42404145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 43372048 - 43372096
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgt 156  Q
    ||||||||||| | | ||||||||| |||| ||||||||||||||||||    
T  43372048 aaaaacagtttgactgtattttatcttttgttataaaaataccttatgt 43372096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 54069496 - 54069564
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgctt 176  Q
    ||||||| |||||  |||||||||| |||| |||||||||| | |||| || |||||||||||| ||||    
T  54069496 aaaaacaatttaacattattttatcttttgatataaaaatagcatatgcaagcttatacataagtgctt 54069564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 24684902 - 24684977
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| || |||||||||||||| ||| ||||||||||| ||||||||| ||||| || |||||||||||||||    
T  24684902 aaaaacaattaaaatttattttatctttttctataaaaatagcttatgtaaacttatgcaaaagcgcttatcatga 24684977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 46778307 - 46778388
Alignment:
Q  109 aaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtgt 190  Q
    |||||| ||||| |||||||||||  |||||||| ||||| ||||| ||| || ||||||||||||||||||||| ||||||    
T  46778307 aaaacaatttaactttattttatctcttgctatagaaatagcttatataagctgatacataagcgcttatcatgataagtgt 46778388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 30956705 - 30956780
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| ||||| ||||||||||| ||||||||| ||||| ||||||||| ||||| |||||  |||||||||||    
T  30956705 aaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagcttatgcataaatgcttatcatga 30956780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 30972517 - 30972592
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| ||||| ||||||||||| ||||||||| ||||| ||||||||| ||||| |||||  |||||||||||    
T  30972517 aaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagcttatgcataaatgcttatcatga 30972592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 35959543 - 35959610
Alignment:
Q  116 tttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||| ||||||||||||||| ||||| ||||| ||||||| | ||||||||||||| ||||||||||    
T  35959543 tttaactttattttatccttttctatagaaatagcttatgtgagcttatacataagctcttatcatga 35959610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 12862321 - 12862399
Alignment:
Q  103 atataaaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcat 181  Q
    ||||| |||||| ||||||| ||||||||| |||||||||||||||  ||||| || |||| ||||||| |||||||||    
T  12862321 atatacaaaacaatttaaatctattttatcttttgctataaaaatagattatgcaagcttaaacataagtgcttatcat 12862399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 20880450 - 20880393
Alignment:
Q  126 ttttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||| ||||    
T  20880450 ttttatcatttgctataaaaatagcttatgtaagcttatacataagcacttattatga 20880393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 584037 - 583965
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatca 180  Q
    ||||||| ||||| ||||||||||| ||| ||||| ||||| ||||||||| ||||||| ||||| |||||||    
T  584037 aaaaacaatttaactttattttatcattttctatagaaataacttatgtaagcttatacgtaagcacttatca 583965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 37689210 - 37689149
Alignment:
Q  122 tttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||||||| ||||||||| ||||| ||||||| | ||||||| ||||| ||||||||||    
T  37689210 tttattttatcttttgctatagaaatagcttatgtgaacttatacgtaagcacttatcatga 37689149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 18405927 - 18405979
Alignment:
Q  124 tattttatcctttgctataaaaataccttatgtaaccttatacataagcgctt 176  Q
    ||||||||| ||| ||||| ||||| ||||||||| |||||||||||||||||    
T  18405927 tattttatcttttcctatataaataacttatgtaagcttatacataagcgctt 18405979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 20170514 - 20170439
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| |||||  |||||||||| |||||  |||||||| ||| || || || |||||||||||||||||||||    
T  20170514 aaaaacaatttaacattattttatcttttgcagtaaaaatagcttgtgcaagctgatacataagcgcttatcatga 20170439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 29520573 - 29520647
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtgtctatgcta 198  Q
    ||||||| || |||||||||||| || |||||| || |||||||||||| |||||| |||| |||||| |||||||    
T  29520573 ttattttctcttttgctataaaa-tagcttatgcaagcttatacataagtgcttattatgataagtgtttatgcta 29520647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 19983752 - 19983698
Alignment:
Q  127 tttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcat 181  Q
    |||||| ||| ||||| ||||| ||||||||| ||||||||||| ||||||||||    
T  19983752 tttatctttttctatagaaataacttatgtaagcttatacataaacgcttatcat 19983698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 53789541 - 53789615
Alignment:
Q  109 aaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||| ||||| |||| || ||| ||| ||||| ||||| ||||||||| |||| ||||||| |||||||||||    
T  53789541 aaaacattttaattttagttcatcttttcctatagaaatagcttatgtaagcttacacataagtgcttatcatga 53789615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 1508675 - 1508735
Alignment:
Q  124 tattttatcctttgctataaaaa-taccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||||| |||||| |||||| ||  ||||| || ||||||||||||||||||||||||    
T  1508675 tattttatcttttgctttaaaaaatagtttatgcaagcttatacataagcgcttatcatga 1508735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 17830136 - 17830064
Alignment:
Q  117 ttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtg 189  Q
    |||| ||||||||||| ||||||||||||||| ||||||||| | |||| ||||| ||||||||||| |||||    
T  17830136 ttaactttattttatcatttgctataaaaatagcttatgtaatcgtatagataagtgcttatcatgataagtg 17830064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 37473381 - 37473315
Alignment:
Q  117 ttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||| ||| ||||||| ||||||||||||||| ||||||||| |||||||||||| |||| ||||||    
T  37473381 ttaactttgttttatcatttgctataaaaatagcttatgtaagcttatacataagtgcttgtcatga 37473315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 5741622 - 5741578
Alignment:
Q  139 tataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  5741622 tataaaaatagcttatgtaaacttatacataagcgcttatcatga 5741578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 14331780 - 14331701
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaag 187  Q
    ||||||| ||||| ||||||||||| | | || || ||||| ||||||| | |||||||||||| |||||||||||||||    
T  14331780 aaaaacaatttaactttattttatcttgttctgtagaaatagcttatgttagcttatacataagtgcttatcatgagaag 14331701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 27976586 - 27976511
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| ||||| ||| ||  ||| ||||||||||||||| ||||||||| ||||||||||||  ||||||||||    
T  27976586 aaaaacaatttaactttgttcaatcatttgctataaaaatagcttatgtaagcttatacataaggacttatcatga 27976511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 49938714 - 49938655
Alignment:
Q  117 ttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgctt 176  Q
    |||| |||| |||||||||||||||| ||||| ||||||| | |||||||||||||||||    
T  49938714 ttaactttaatttatcctttgctatagaaatagcttatgtgagcttatacataagcgctt 49938655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 33541808 - 33541862
Alignment:
Q  129 tatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||||| |||||||||||| |||||  || ||||||||||||||||||||||||    
T  33541808 tatccttagctataaaaatatcttattcaagcttatacataagcgcttatcatga 33541862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 29904748 - 29904676
Alignment:
Q  110 aaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    ||||| ||||||||||||||||| ||||||||||||||| ||||| | | ||||| |||||||  |||||||||    
T  29904748 aaacattttaaatttattttatcttttgctataaaaatagcttatatgagcttat-cataagcttttatcatga 29904676  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 41195272 - 41195345
Alignment:
Q  108 aaaaacagtttaaattt-attttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatca 180  Q
    ||||||||||||| ||| || ||||| ||| |||||||||||  |||||||| |||||||||||||| ||||||    
T  41195272 aaaaacagtttaacttttatgttatcatttactataaaaatagtttatgtaaacttatacataagcgattatca 41195345  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 5720941 - 5720897
Alignment:
Q  139 tataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||    
T  5720941 tataaaaatagcttacgtaaacttatacataagcgcttatcatga 5720897  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 1829075 - 1829113
Alignment:
Q  160 cttatacataagcgcttatcatgagaagtgtctatgcta 198  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  1829075 cttatacataagcgcttatcatgataagtgtttatgcta 1829113  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 30582027 - 30582077
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaa 158  Q
    |||||||  |||| ||||||||||| ||| |||||||||||||||||||||    
T  30582027 aaaaacaagttaactttattttatctttttctataaaaataccttatgtaa 30582077  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 37769747 - 37769801
Alignment:
Q  116 tttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataa 170  Q
    ||||| ||||||||||| |||||||||||||||  ||||||||  ||||||||||    
T  37769747 tttaactttattttatcatttgctataaaaataatttatgtaaatttatacataa 37769801  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 47432087 - 47432037
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaa 158  Q
    ||||||| ||||| ||||||||||| ||| ||||||||||| |||||||||    
T  47432087 aaaaacaatttaactttattttatctttttctataaaaatagcttatgtaa 47432037  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 30581808 - 30581744
Alignment:
Q  92 acttatagtatatataaaaaacagtttaaatttattttatcctttgctataaaaataccttatgta 157  Q
    |||||||| ||||| |||||||| ||||| ||||||| ||| ||| ||||||||||| ||||||||    
T  30581808 acttatagcatata-aaaaaacaatttaactttatttcatcgttttctataaaaatagcttatgta 30581744  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 30191973 - 30191909
Alignment:
Q  117 ttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcat 181  Q
    |||| ||||||||||  ||||||||||||||| |||| |||  |||||||| ||| |||||||||    
T  30191973 ttaactttattttattttttgctataaaaatagcttaggtatacttatacacaagtgcttatcat 30191909  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 44932029 - 44932093
Alignment:
Q  126 ttttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaagtgt 190  Q
    ||||||| ||||||||||| |||  ||||| || ||||||| |||| ||||||||||| ||||||    
T  44932029 ttttatcttttgctataaatatagtttatgcaagcttatacctaagtgcttatcatgataagtgt 44932093  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 35446046 - 35445975
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaa-ccttatacataagcgcttat 178  Q
    ||||||| ||||| ||||||||||| ||||||||||||||| ||||||||| | |||||||| |||||||||    
T  35446046 aaaaacaatttaactttattttatcatttgctataaaaatagcttatgtaagctttatacattagcgcttat 35445975  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 3735579 - 3735645
Alignment:
Q  117 ttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||| ||||||| ||| ||||||||| ||||| ||||||||| ||||| ||||||||||||||||||    
T  3735579 ttaactttatttcatcttttgctatagaaatagcttatgtaagcttatccataagcgcttatcatga 3735645  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 42500304 - 42500372
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgctt 176  Q
    ||||||| ||||| ||||||||||| |||| |||||||||| |||||| || ||||||||| |||||||    
T  42500304 aaaaacaatttaactttattttatcttttgatataaaaatagcttatgcaagcttatacattagcgctt 42500372  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 16458072 - 16458129
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatca 180  Q
    |||||||||| ||||||||||||||| |||||| || |||||| |||||| |||||||    
T  16458072 ttattttatcttttgctataaaaatagcttatgcaagcttatatataagcacttatca 16458129  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 25461744 - 25461804
Alignment:
Q  127 tttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatgagaag 187  Q
    |||||| ||||||||||||||| |||||| || |||||| |||| | ||||||||||||||    
T  25461744 tttatcttttgctataaaaatagcttatgcaagcttatatataaccacttatcatgagaag 25461804  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 7999182 - 7999127
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttat 178  Q
    |||||||| | ||||| ||||||||| |||||| || |||||||||||||||||||    
T  7999182 ttattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 7999127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 10639944 - 10639873
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatc 179  Q
    ||||||| ||||| || |||||||| ||||||||| ||||| ||||| ||  |||||||||||| |||||||    
T  10639944 aaaaacaatttaatttaattttatcttttgctatagaaatagcttatatagacttatacataagtgcttatc 10639873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 3932764 - 3932828
Alignment:
Q  108 aaaaacagtttaaatttattttatcctttgctataaaaataccttatgtaa-ccttatacataag 171  Q
    ||||||| || || || |||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  3932764 aaaaacaattaaacttcattttatcttttgctataaaaatagcttatgtaattcttatacataag 3932828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 13697822 - 13697878
Alignment:
Q  92 acttatagtatatataaaaaacagtttaaatttattttatcctttgctataaaaata 148  Q
    ||||||| |||||| |||||| | |||||  |||||||||| |||||||||||||||    
T  13697822 acttataatatataaaaaaaaaaatttaacattattttatcttttgctataaaaata 13697878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 14932285 - 14932241
Alignment:
Q  104 tataaaaaacagtttaaatttattttatcctttgctataaaaata 148  Q
    |||| |||||| ||||| ||||||||||| |||||||||||||||    
T  14932285 tatacaaaacaatttaactttattttatcttttgctataaaaata 14932241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 207675 - 207735
Alignment:
Q  123 ttattttatcctttgctataaaaataccttatgtaaccttatacataagcgcttatcatga 183  Q
    |||||||||| |||| ||  |||||| |||||| || |||||||||||| |||||||||||    
T  207675 ttattttatcttttgttactaaaatagcttatgcaagcttatacataagtgcttatcatga 207735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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