View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7383_low_21 (Length: 211)

Name: NF7383_low_21
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7383_low_21
NF7383_low_21
[»] chr7 (16 HSPs)
chr7 (19-196)||(21763909-21764084)
chr7 (25-195)||(21771805-21771977)
chr7 (26-164)||(21628001-21628140)
chr7 (25-141)||(21704542-21704659)
chr7 (23-138)||(21651971-21652087)
chr7 (23-196)||(15713455-15713641)
chr7 (26-159)||(21714067-21714198)
chr7 (25-195)||(21725740-21725912)
chr7 (26-117)||(21788152-21788244)
chr7 (26-169)||(21808298-21808445)
chr7 (25-195)||(21785245-21785422)
chr7 (59-152)||(21740994-21741087)
chr7 (26-141)||(21992069-21992188)
chr7 (23-141)||(21663994-21664116)
chr7 (23-183)||(21681494-21681668)
chr7 (23-63)||(21646720-21646761)
[»] scaffold0182 (2 HSPs)
scaffold0182 (19-196)||(25160-25332)
scaffold0182 (60-195)||(34378-34514)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 21764084 - 21763909
Alignment:
Q  19 aatatggcaccctttgtatcttgg-tcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcat 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||| ||| |||||||||||||||| |||||||| |||||||||    
T  21764084 aatatggcaccctttgtatcttgggtcgtgaattttggggtgtttgctttga---ttgtagctccacaaatttttctttaagagtttgggatgccatcat 21763988  T
Q  118 tcattcaatattctaatggttgagagatattgatcttgcaaagttacgaaattatgaatcaaaatgcggattatatatt 196  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  21763987 tcattcaatacactaatggttgagggatattgatcttgcaaagttacgaaatcatgaatgaaaatgcggattatatatt 21763909  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 21771977 - 21771805
Alignment:
Q  25 gcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattc 123  Q
    |||||||||||||||| |||| ||||||||||||| |||||||||| |||||||  || |||||||||||||||||||||| || |||||||||||||||    
T  21771977 gcaccctttgtatcttcggtcttgaattttggggtatttgctttgatttttgtagttccacaaatttttctttaatagtttcggatgccatcattcattc 21771878  T
Q  124 aatattctaatggttgagagatattgatcttgcaaagtt-acgaaattatgaatcaaaatgcggattatatat 195  Q
    |||||  ||||||||||| |||||||||||| |||| || | |||| ||  |||||||||||| |||||||||    
T  21771877 aatatgataatggttgagggatattgatctttcaaacttgatgaaaatacaaatcaaaatgcgtattatatat 21771805  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 21628140 - 21628001
Alignment:
Q  26 caccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattca 124  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  21628140 caccctttgtatctttggtcgtgcatttcggggtgtttgctttgaattttttaactccacaaatttttctttaatagtttgggatgccatcattctttca 21628041  T
Q  125 atattctaatggttgagagatattgatcttgcaaagttac 164  Q
    ||||  |||||||||||  ||||||||||| |||| ||||    
T  21628040 atataataatggttgaggaatattgatctttcaaacttac 21628001  T

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Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 21704659 - 21704542
Alignment:
Q  25 gcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattc 123  Q
    |||||||||||||||| ||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  21704659 gcaccctttgtatctttggtcgtgcatttggaggtgtttgctttgaattttttaactcgacaaatttttctttaatagtttgggatgccatcattcattc 21704560  T
Q  124 aatattctaatggttgag 141  Q
    |||||  |||||||||||    
T  21704559 aatataataatggttgag 21704542  T

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Target: chr7; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 21652087 - 21651971
Alignment:
Q  23 tggcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcat 121  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  || ||||||||||||||||||||||||| ||||||||||||     
T  21652087 tggcaccctttgtatctttggtcgtgaattttggggtgtttgctttgatttttgtagttccacaaatttttctttaatagtttgggatgccatcattcaa 21651988  T
Q  122 tcaatattctaatggtt 138  Q
    |||||||  ||||||||    
T  21651987 tcaatataataatggtt 21651971  T

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Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 15713641 - 15713455
Alignment:
Q  23 tggcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattt---------tgtaactcgacaaatttttctttaa---tagtttggggt 109  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| ||||         |||| ||| |||| ||||| || ||   ||||||| | |    
T  15713641 tggcaccctttgtatctttggtcgtgaactttggggtgtttgctttgtatttatgtaactttgtagctccacaatttttttttcaagggtagtttgcgat 15713542  T
Q  110 gccatcattcattcaatattctaatggttgagagatattgatcttgcaaagttacgaaattatgaatcaaaatgcggattatatatt 196  Q
    ||||||||||||||| |||  | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15713541 gccatcattcattcattataatcatggttgagggatattgatcttgcaaagtcacgaaattatgaatcaaaatgcggattatatatt 15713455  T

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Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 21714198 - 21714067
Alignment:
Q  26 caccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattca 124  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  21714198 caccctttgtatcttcggtcgtgaattttggggtgtttgcattgatttttgtagctccacaaatttttctttaatagtttgggatgccatccttcattca 21714099  T
Q  125 atattctaatggttgagagatattgatcttgcaaa 159  Q
    |||   ||||  ||||| |||||||||||| ||||    
T  21714098 ata---taatatttgagggatattgatctttcaaa 21714067  T

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Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 21725912 - 21725740
Alignment:
Q  25 gcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattc 123  Q
    |||||||||||||||| |||| ||||||||||| | |||||||||| |||||||  || |||||||||||||||||||||| || |||||||||||||||    
T  21725912 gcaccctttgtatcttcggtcttgaattttgggatatttgctttgatttttgtagttccacaaatttttctttaatagtttcggatgccatcattcattc 21725813  T
Q  124 aatattctaatggttgagagatattgatcttgcaaagtt-acgaaattatgaatcaaaatgcggattatatat 195  Q
    |||||  ||||||||||| || ||||||||  |||| || | |||| ||  |||||||||||| |||||||||    
T  21725812 aatatgataatggttgagggaaattgatctgtcaaacttgatgaaaatacaaatcaaaatgcgtattatatat 21725740  T

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Target: chr7; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 21788244 - 21788152
Alignment:
Q  26 caccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcat 117  Q
    |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  21788244 caccctttgtattttcggtcgtgaattttggggtgtttgctttgatttttgtaactccacaaatttttcattaatagtttgggatgccatcat 21788152  T

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Target: chr7; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 21808298 - 21808445
Alignment:
Q  26 caccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaa---tagtttggggtgccatcattcat 121  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||||||| || ||| ||||  |||| || ||   ||||||||| | |||||||||||    
T  21808298 caccctttgtatctttggtcgtgaattttggggtatttgatttgaattttttagctccacaatctttttttcaagggtagtttgggattccatcattcat 21808397  T
Q  122 tcaatattctaatggttgagagatattgatcttgcaaagttacgaaat 169  Q
    |||||||  |||||| ||||  |||||||||||||||||| |||||||    
T  21808398 tcaatataataatggctgaggaatattgatcttgcaaagtaacgaaat 21808445  T

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Target: chr7; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 21785422 - 21785245
Alignment:
Q  25 gcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaa---tagtttggggtgccatcattca 120  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||| |||| ||||| || ||   ||||||||| || ||||||| |    
T  21785422 gcaccctttgtatctttggtcgtgaattttggggtatttgctttgaattttctagctccacaatttttttttcaagggtagtttgggatgtcatcattga 21785323  T
Q  121 ttcaatattctaatggttgagagatattgatc--ttgcaaagtt-acgaaattatgaatcaaaatgcggattatatat 195  Q
    ||||||||  |||||||| || ||||||||||  || |||| || | |||| ||  ||||||||||||||||||||||    
T  21785322 ttcaatatgataatggttaagggatattgatctttttcaaacttgatgaaaatacaaatcaaaatgcggattatatat 21785245  T

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Target: chr7; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 21741087 - 21740994
Alignment:
Q  59 gtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattcaatattctaatggttgagagatattgatc 152  Q
    ||||||||| | ||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||  |||||||||||  |||||||||    
T  21741087 gtttgctttaatttttgtagctccacaattttttctttaatagtttgggatgccatcattcattcaatataataatggttgaggaatattgatc 21740994  T

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Target: chr7; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 21992188 - 21992069
Alignment:
Q  26 caccctttgtatct-tggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaa---tagtttggggtgccatcattcat 121  Q
    |||||||||||||| || |||||||||||||||| ||||||||||||||| || ||| |||| |||||||| ||    |||||||| |||||||||||||    
T  21992188 caccctttgtatctgtgttcgtgaattttggggtatttgctttgaattttctagctccacaattttttcttcaagggaagtttgggatgccatcattcat 21992089  T
Q  122 tcaatattctaatggttgag 141  Q
    |||||||  |||||||||||    
T  21992088 tcaatataataatggttgag 21992069  T

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Target: chr7; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 21664116 - 21663994
Alignment:
Q  23 tggcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaa---tagtttggggtgccatcatt 118  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||||||||||| || ||| |||| ||||| || ||   ||||||||| ||||||||||    
T  21664116 tggcaccctttgtatctttggtcgtgaactttggggtatttgctttgaattttctagctccacaatttttttttcaagggtagtttgggatgccatcatt 21664017  T
Q  119 cattcaatattctaatggttgag 141  Q
    | ||||||||  |||||||||||    
T  21664016 ctttcaatataataatggttgag 21663994  T

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Target: chr7; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 21681668 - 21681494
Alignment:
Q  23 tggcaccctttgtatctt-ggtcgtgaattttggggtgtttgctttgaat---------tttgtaactcgacaaatttttctttaa---tagtttggggt 109  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| ||         |||||| ||| ||||  ||||||| ||   ||||||||| |    
T  21681668 tggcaccctttgtatctttggtcgtgaattttggggtgtttgatttgtatctatgtatatttgtagctccacaatattttcttcaagggtagtttgggat 21681569  T
Q  110 gccatcattcattcaatattctaatggttgagagatattgatcttgcaaagtt-acgaaattatgaatcaaaatg 183  Q
    | ||||||||||||||| |  |||||||||||  ||||||||||| |||| || |||||||||| ||||||||||    
T  21681568 gacatcattcattcaatgtaataatggttgaggaatattgatctttcaaacttaacgaaattataaatcaaaatg 21681494  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 21646761 - 21646720
Alignment:
Q  23 tggcaccctttgtatctt-ggtcgtgaattttggggtgtttg 63  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  21646761 tggcaccctttgtatctttggtcgtgaattttggggtgtttg 21646720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 25332 - 25160
Alignment:
Q  19 aatatggcaccctttgtatcttgg-tcgtgaattttggggtgtttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcat 117  Q
    |||||| ||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |||  ||| ||||||||||| |||||||| |||||||||    
T  25332 aatatgccaccctttgtatcttgggtggtgaattttggggtgtttgctttgatttttgtagctcctcaattttttctttaagagtttgggctgccatcat 25233  T
Q  118 tcattcaatattctaatggttgagagatattgatcttgcaaagttacgaaattatgaatcaaaatgcggattatatatt 196  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||||      |||||||||||||||||||||||    
T  25232 tcattcaatacactaatggttgagggatattgatcttgcaaagttacgaa------aatcaaaatgcggattatatatt 25160  T

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Target: scaffold0182; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 34514 - 34378
Alignment:
Q  60 tttgctttgaattttgtaactcgacaaatttttctttaatagtttggggtgccatcattcattcaatattctaatggttgagagatattgatcttgcaaa 159  Q
    |||||||||| |||||||  || |||||||||||||||||||||| || ||||||||||||||||||||  ||||||||||| || ||||||||  ||||    
T  34514 tttgctttgatttttgtagttccacaaatttttctttaatagtttcggatgccatcattcattcaatatgataatggttgagggaaattgatctgtcaaa 34415  T
Q  160 gtt-acgaaattatgaatcaaaatgcggattatatat 195  Q
     || | |||| ||  |||||||||||| |||||||||    
T  34414 cttgatgaaaatacaaatcaaaatgcgtattatatat 34378  T

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