View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7383_low_3 (Length: 649)

Name: NF7383_low_3
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7383_low_3
NF7383_low_3
[»] chr5 (1 HSPs)
chr5 (1-637)||(4410808-4411446)


Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 637
Target Start/End: Original strand, 4410808 - 4411446
Alignment:
Q  1 aaaattgaagagacattgtatttgtcccacatacatagtttggttggtgatctaaggaacaatggag-aataaggaagaggtcttggatttaatctagaa 99  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4410808 aaaattgaagagacattgtagttgtcccacatacatagtttggttggtgatctaaggaacaatggagtaataaggaagaggtcttggatttaatctagaa 4410907  T
Q  100 aactaacattaacactaattttactaacatttgcctattagacaaaacattgtatttgacatcaaagttactatgtatgtatctggtgaatctatgcagt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4410908 aactaacattaacactaattttactaacatttgcctattagacaaaacattgtatttgacatcaaagttactatgtatgtatttggtgaatctatgcagt 4411007  T
Q  200 ccaaggtctgcagaacaaaatctaatagttcatctgtttcaacttctaaca-tttttcctataaaaacattatatttttcttacaaagaataaactcaat 298  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  4411008 ccaaggtctgcggaacaaaatctaatagttcatctgtttcaacttctaacattttttcctataaaaacattataattttcttacaaagaataaactcaat 4411107  T
Q  299 caattacattgaactatctaagtggatttacttcttcggtttgtttttagagatcctccatttatca-nnnnnnnnnnnnacatgattagccatatatgc 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||    
T  4411108 caattacattgaactatctaagtggatttacttcttcggtttgtttttagagatcctccatttatcatttttttttttttacatgattagccatatatgc 4411207  T
Q  398 tggtagtagttttcttttaccttgaaattttaaagtattattcacaatacaaatatttaagattttaaatgtgtttnnnnnnnggtaaatttaatatttg 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  4411208 tggtagtagttttcttttaccttgaaattttaaagtattattcacaatacaaatatttaagattttaaatgtgtttaaaaaaaggtaaatttaatatttg 4411307  T
Q  498 aatcgctatactttaagcataatacaaatttaaatgctttaacggactaaatttgtggggattttgaaattttttgaacgaaacgggaagtgtgataaac 597  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  4411308 aatctctatactttaagcataatacaaatttaaatgctttaacggactaaatttgtggggattttgaaattttttgaacgaaac-agaagtgtgataaac 4411406  T
Q  598 tagattatctacaacattacaaaatttgggagatcaaatc 637  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4411407 tagattatctacaacattacaaaatttgggagatcaaatc 4411446  T

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