View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7383_low_7 (Length: 346)
Name: NF7383_low_7
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7383_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 168 - 327
Target Start/End: Complemental strand, 47183364 - 47183210
Alignment:
| Q |
168 |
cacaatgacagggtagcatttcatataatttattctcttgggtttaagatatggcgtataaaataatatagtgttgaaaaagaggtcaatcaatctatct |
267 |
Q |
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| T |
47183364 |
cacaatgacagggtagcatttcatataatttattctcttgtgtttaagatatggcgtataaaata-tatagtgttgaaaaagaggtcaatc----tatct |
47183270 |
T |
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| Q |
268 |
ccatctcaaagccaaacccaaaaattgtaaatgtcttcatttttcttgttagtttttctg |
327 |
Q |
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| T |
47183269 |
ccatctcaaagccaaacccaaaaattgtaaatgtcttcatttttcttgttagtttttctg |
47183210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 47183522 - 47183427
Alignment:
| Q |
13 |
aatattattctattttgaaaaagagtagaccaagactttctttttcacgtgttatttgattaatttcaattctctccttctggaacagtgtgtatg |
108 |
Q |
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| T |
47183522 |
aatattattctattttgaaaaagagtagaccaagactttctttttcacgtgttatttgattaatttcaattctctccttctggaacagtgtgtatg |
47183427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 324
Target Start/End: Complemental strand, 10568213 - 10568108
Alignment:
| Q |
213 |
aagatatggcgtataaaataatatagtgttgaaaaagaggtcaatcaatctatctccatctcaaagccaaacccaaa--aattgtaaatgtcttcatttt |
310 |
Q |
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| T |
10568213 |
aagatatggcgtataaaataatatagtgtggaaaaagaggtc--------tatctacatctcaaaaccaaacccaaattaattgtaaatgtcttcatttt |
10568122 |
T |
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| Q |
311 |
tcttgttagttttt |
324 |
Q |
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| T |
10568121 |
tcttgttaattttt |
10568108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 10568480 - 10568404
Alignment:
| Q |
13 |
aatattattctattttgaaaa-agagtagaccaagactttctttttcacg---tgttatttgattaatttcaattct |
85 |
Q |
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| T |
10568480 |
aatattattctatttaaaacatagagtagaccaagactttgtttttcacgtgttgttatttgattaagtttaattct |
10568404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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