View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7383_low_8 (Length: 300)
Name: NF7383_low_8
Description: NF7383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7383_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 2459381 - 2459592
Alignment:
| Q |
1 |
catcaacttgttgacttttggaagactaaaagttgaagannnnnnnnn--gagactaaaacaaaaaattgaaatatttataggaacggaaaataacctat |
98 |
Q |
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| T |
2459381 |
catcaacttgttgacttttggaagactaaaagttgaagaatatttttttggagactaaaacaaaaaattgaaatatttataggaacggaaaataac-tat |
2459479 |
T |
|
| Q |
99 |
tttttaatatacgataatcatatttaagaatacactcaagaaaataaccacaagtg--gtgatagatcaatgttatctgctatggaataattgtcccaca |
196 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2459480 |
tttttaatataccataatcatatttaagaatacactcaagaaaataaccacaagtggtgtgatagatcaatgttatctgctatggagtaattgtcccaca |
2459579 |
T |
|
| Q |
197 |
aaacaaaatgtaa |
209 |
Q |
| |
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||||||||||||| |
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| T |
2459580 |
aaacaaaatgtaa |
2459592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 42207704 - 42207671
Alignment:
| Q |
49 |
gagactaaaacaaaaaattgaaatatttatagga |
82 |
Q |
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| T |
42207704 |
gagactaaaacaaaaaatttaaatatttatagga |
42207671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 40687149 - 40687117
Alignment:
| Q |
51 |
gactaaaacaaaaaattgaaatatttataggaa |
83 |
Q |
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| T |
40687149 |
gactaaaacaaaaaattgacatatttataggaa |
40687117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 35368121 - 35368153
Alignment:
| Q |
49 |
gagactaaaacaaaaaattgaaatatttatagg |
81 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
35368121 |
gagactaaaacaaaaaattgacatatttatagg |
35368153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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