View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7384_low_1 (Length: 1151)

Name: NF7384_low_1
Description: NF7384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7384_low_1
NF7384_low_1
[»] chr8 (2 HSPs)
chr8 (11-339)||(12171101-12171428)
chr8 (11-339)||(12415529-12415856)
[»] chr7 (2 HSPs)
chr7 (764-954)||(223975-224168)
chr7 (640-704)||(224199-224262)
[»] chr6 (6 HSPs)
chr6 (764-954)||(24607885-24608073)
chr6 (804-929)||(27576437-27576563)
chr6 (640-704)||(24607794-24607858)
chr6 (640-709)||(27576317-27576386)
chr6 (858-929)||(27534183-27534256)
chr6 (656-709)||(30123656-30123709)
[»] chr3 (6 HSPs)
chr3 (742-954)||(25373083-25373295)
chr3 (818-929)||(11468193-11468306)
chr3 (630-696)||(54575134-54575200)
chr3 (874-929)||(53489418-53489473)
chr3 (656-709)||(2614527-2614580)
chr3 (656-709)||(6935608-6935661)
[»] chr5 (4 HSPs)
chr5 (742-862)||(31067553-31067673)
chr5 (640-704)||(31067484-31067548)
chr5 (656-709)||(4931282-4931335)
chr5 (656-709)||(35192773-35192826)
[»] chr2 (3 HSPs)
chr2 (729-953)||(29732874-29733090)
chr2 (611-706)||(29732789-29732884)
chr2 (900-954)||(38563005-38563059)
[»] scaffold0090 (1 HSPs)
scaffold0090 (874-954)||(50922-51002)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 12171428 - 12171101
Alignment:
Q  11 atggacatcataggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct 108  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  12171428 atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct 12171329  T
Q  109 tgtcctcggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttc 208  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||    
T  12171328 tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc 12171229  T
Q  209 cgacaaagaaaatgagaagaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaa 305  Q
    |||||||||||||||||| | | |||||||||   ||| |||| || || |||| ||| |||||||||  |||||||| |||||||||||||||||| ||    
T  12171228 cgacaaagaaaatgagaaaattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaa 12171134  T
Q  306 gaaaagtaacaagattcacttagactgagctgga 339  Q
    |||||||| | |||||||||||| ||||||||||    
T  12171133 gaaaagtagc-agattcacttagcctgagctgga 12171101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 12415856 - 12415529
Alignment:
Q  11 atggacatcataggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct 108  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  12415856 atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct 12415757  T
Q  109 tgtcctcggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttc 208  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||    
T  12415756 tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc 12415657  T
Q  209 cgacaaagaaaatgagaagaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaa 305  Q
    |||||||||||||||||| | | |||||||||   ||| |||| || || |||| ||| |||||||||  |||||||| |||||||||||||||||| ||    
T  12415656 cgacaaagaaaatgagaaaattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaa 12415562  T
Q  306 gaaaagtaacaagattcacttagactgagctgga 339  Q
    |||||||| | |||||||||||| ||||||||||    
T  12415561 gaaaagtagc-agattcacttagcctgagctgga 12415529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 764 - 954
Target Start/End: Complemental strand, 224168 - 223975
Alignment:
Q  764 aaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaac 863  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  224168 aaccttctacgttgttattttctttagtttatacttgggcaaaaaaataaagtttataatgttatttctagagaatgattataatgttcgttattagaac 224069  T
Q  864 tttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa-taaatttatattgtatttttatttg 954  Q
     ||||||||||||  || ||||||| ||| |||||| ||||||||| |||||||||||||||||||||  ||| |||||||||  |||||||||    
T  224068 attgttattttatacgacaagtatgggcaaaaaacttgaagaagtgctctaacaaaaataagaagaaagaaaagttatattgtggttttatttg 223975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 640 - 704
Target Start/End: Complemental strand, 224262 - 224199
Alignment:
Q  640 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 704  Q
    |||||||||  |||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  224262 ataagaaatgatcatcattgtaactaacataaaa-taatcaatattgtaatcaataaaattaaca 224199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 1e-41; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 764 - 954
Target Start/End: Original strand, 24607885 - 24608073
Alignment:
Q  764 aaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaac 863  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||||||| ||| || | |||||||||||||||||||||||||||    
T  24607885 aaccttctacgttgttattttctttagtttatactttggcaaaaaaataaagtttataatgttatttttagagaatgattataatgttcgttattagaac 24607984  T
Q  864 tttgttattttatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 954  Q
     ||||  || || || ||||||| ||| |||||| ||||||||| ||||||||||||||||||||| ||| ||||||| |  |||||||||    
T  24607985 attgt--ttatacgacaagtatgggcaaaaaacttgaagaagtgctctaacaaaaataagaagaaaaaaagttatattttggttttatttg 24608073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 804 - 929
Target Start/End: Original strand, 27576437 - 27576563
Alignment:
Q  804 aaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaactttgttattttat--gataagtatgagcacaaaactagaa 901  Q
    |||| |||||||||||||||||||||| || | | |||||||||||||| ||| |||| ||||||||||||||  || |||||||  || |||| |||||    
T  27576437 aaaaaaataaagtttataatgtttttt-tagagattgattataatgttctttactagagctttgttattttatacgaaaagtatggacaaaaaattagaa 27576535  T
Q  902 gaagtgatctaacaaaaataagaagaaa 929  Q
    ||| || |||||||||||||||||||||    
T  27576536 gaaatgctctaacaaaaataagaagaaa 27576563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 640 - 704
Target Start/End: Original strand, 24607794 - 24607858
Alignment:
Q  640 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 704  Q
    ||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  24607794 ataagaaatggtcatcattgtaactaatacggaaatgatcaatattgtaatcaataaaattaaca 24607858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 640 - 709
Target Start/End: Original strand, 27576317 - 27576386
Alignment:
Q  640 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 709  Q
    ||||||||||||||||||||||||||| |||   | ||||||||| ||||||||||||||||||||||||    
T  27576317 ataagaaattgtcatcattgtaactaatacatggaggatcaatatagtaatcaataaaattaacatacaa 27576386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 858 - 929
Target Start/End: Original strand, 27534183 - 27534256
Alignment:
Q  858 tagaactttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa 929  Q
    |||| ||||||||||||||  || |||||||  || |||| ||||||||||| |||||||||||||||||||||    
T  27534183 tagagctttgttattttatacgaaaagtatggacaaaaaattagaagaagtgctctaacaaaaataagaagaaa 27534256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 656 - 709
Target Start/End: Original strand, 30123656 - 30123709
Alignment:
Q  656 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 709  Q
    ||||||||||||||| ||| |||||||||| |||||||||| || || ||||||    
T  30123656 attgtaactaacacagaaaagatcaatattctaatcaataatataaaaatacaa 30123709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 1e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 742 - 954
Target Start/End: Original strand, 25373083 - 25373295
Alignment:
Q  742 atttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatga 841  Q
    |||| ||| |||||||| | | |||||||| ||||||||||||||||| |||||||| ||  |||| |||||||||||||||| | |||||| | |||||    
T  25373083 attttaaaggaatatctttatcaaccttctacgttgttattttctttagtttatacttaggaaaaa-aataaagtttataatgctatttctagagaatga 25373181  T
Q  842 ttataatgttcgttattagaactttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttata 939  Q
    |||||||||| ||||||||||| ||||||||||||  || ||||||| ||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||    
T  25373182 ttataatgttagttattagaacattgttattttataagacaagtatgggcaaaaaacttgaagaagtgctctaataaaaataagaagaaa-aaagttata 25373280  T
Q  940 ttgtatttttatttg 954  Q
    ||||  |||||||||    
T  25373281 ttgtggttttatttg 25373295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 818 - 929
Target Start/End: Complemental strand, 11468306 - 11468193
Alignment:
Q  818 tataatgttttttctataaaatgattataatgttcgttattagaactttgttattt--tatgataagtatgagcacaaaactagaagaagtgatctaaca 915  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||| |||||||||  || |||||||||  ||| |||||| ||||||||| |||||||    
T  11468306 tataatgttatttctagagaatgattataatgttcgttattagaacattgttatttgatacgataagtattggcaaaaaacttgaagaagtgctctaaca 11468207  T
Q  916 aaaataagaagaaa 929  Q
    ||||||||||||||    
T  11468206 aaaataagaagaaa 11468193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 630 - 696
Target Start/End: Original strand, 54575134 - 54575200
Alignment:
Q  630 atccgcaaatataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataa 696  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||  ||| ||||| |||| |||||    
T  54575134 atccgtaaacataagaaattatcatcattgtaactaacacaaaaaatatccatattctaataaataa 54575200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 874 - 929
Target Start/End: Original strand, 53489418 - 53489473
Alignment:
Q  874 tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa 929  Q
    |||||||||||||||   |||| || |||||||| |||||||||||||||||||||    
T  53489418 tatgataagtatgaggcaaaaattataagaagtgctctaacaaaaataagaagaaa 53489473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 656 - 709
Target Start/End: Complemental strand, 2614580 - 2614527
Alignment:
Q  656 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 709  Q
    |||||||||| ||||||||  ||||||||| ||||||||||||| || ||||||    
T  2614580 attgtaactatcacaaaaaatatcaatattttaatcaataaaataaaaatacaa 2614527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 656 - 709
Target Start/End: Original strand, 6935608 - 6935661
Alignment:
Q  656 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 709  Q
    ||||||||||||||| ||| |||||||||| |||||||||| || || ||||||    
T  6935608 attgtaactaacacataaaagatcaatattctaatcaataacataaaaatacaa 6935661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 742 - 862
Target Start/End: Original strand, 31067553 - 31067673
Alignment:
Q  742 atttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatga 841  Q
    |||||||| |||||||| | | ||| ||||  |||||||||||||||| |||||||| || ||||| |||||||||||||||||| ||| || | |||||    
T  31067553 atttcaaaggaatatctttatcaactttctaagttgttattttctttagtttatacttaggcaaaaaaataaagtttataatgttatttttagagaatga 31067652  T
Q  842 ttataatgttcgttattagaa 862  Q
    |||||||||||||||||||||    
T  31067653 ttataatgttcgttattagaa 31067673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 640 - 704
Target Start/End: Original strand, 31067484 - 31067548
Alignment:
Q  640 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 704  Q
    |||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  31067484 ataaaaaatggtcatcattataactaacacagaaatgatcaatattgtaatcaatacaattaaca 31067548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 656 - 709
Target Start/End: Original strand, 4931282 - 4931335
Alignment:
Q  656 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 709  Q
    ||||||| ||||||| ||| |||||||||| ||||||||||||| || ||||||    
T  4931282 attgtaattaacacataaaagatcaatattctaatcaataaaataaaaatacaa 4931335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 656 - 709
Target Start/End: Complemental strand, 35192826 - 35192773
Alignment:
Q  656 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 709  Q
    |||||||||||||||||||  ||||||||| |||||||||| || || ||||||    
T  35192826 attgtaactaacacaaaaaatatcaatattctaatcaataatataaaaatacaa 35192773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 5e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 729 - 953
Target Start/End: Original strand, 29732874 - 29733090
Alignment:
Q  729 aaattaacatacaatttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgtttt 828  Q
    |||||||||||  |||| || ||||||||| | | ||| |||| ||||||||||||||||| |||||||  ||  |||| |||||||||||||           
T  29732874 aaattaacata--attttaatcgaatatctttatcaactttctacgttgttattttctttagtttatacggaggaaaaaaaataaagtttata------- 29732964  T
Q  829 ttctataaaatgattataatgttcgttattagaactttgttattt--tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaag 926  Q
    | ||| | |||||||||||||||| |||||| |||||||||||||  ||  ||||||||| ||| ||||||||||| |||| ||||||||||| | |||     
T  29732965 tcctagagaatgattataatgttcattattaaaactttgttatttgatacaataagtatgggcaaaaaactagaagcagtgctctaacaaaaagaggaa- 29733063  T
Q  927 aaataaatttatattgtatttttattt 953  Q
    ||| ||| ||||||||| |||||||||    
T  29733064 aaacaaagttatattgtgtttttattt 29733090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 611 - 706
Target Start/End: Original strand, 29732789 - 29732884
Alignment:
Q  611 tattcaaactgaagataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacata 706  Q
    |||||||||| || |||||||||| ||| ||| |||||  |||||||||||||||||||  | | |||||||||||||||||||||||||||||||    
T  29732789 tattcaaactaaaaataagatccgtaaaaataggaaatgatcatcattgtaactaacacggagaggatcaatattgtaatcaataaaattaacata 29732884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 900 - 954
Target Start/End: Complemental strand, 38563059 - 38563005
Alignment:
Q  900 aagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 954  Q
    ||||| || ||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  38563059 aagaaatgctctaacaaaaataaggagatataaagttatattgtatttttatttg 38563005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 874 - 954
Target Start/End: Original strand, 50922 - 51002
Alignment:
Q  874 tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 954  Q
    ||||||||||||||||  |||| || |||||||| ||||| ||||||||||||||| ||  ||||||| | ||||||||||    
T  50922 tatgataagtatgagccaaaaattataagaagtgttctaaaaaaaataagaagaaaaaatattatattttgtttttatttg 51002  T

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