View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7384_low_11 (Length: 239)
Name: NF7384_low_11
Description: NF7384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7384_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 35220302 - 35220521
Alignment:
| Q |
4 |
actaaatacggatttacattcattgataatagcaccatattccgtataatcttgcttgttagaggcaaagctgtcgacaaccgtctttaagtcaagttca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
35220302 |
actaaatacggatttacattcattgataatagcaccatattccgtataattttgcttgttagaggcaaagttgtcgacaaccgtctttgagtcaagttca |
35220401 |
T |
|
| Q |
104 |
aagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcacctcatgcttgtgctcaaatcatt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35220402 |
aagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcacctcatgcttgtgctcaaaccatt |
35220501 |
T |
|
| Q |
204 |
ccgtttttgcaatcacaaac |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35220502 |
ccgtttttgcaatcacaaac |
35220521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 5561773 - 5561992
Alignment:
| Q |
4 |
actaaatacggatttacattcattgataatagcaccatattccgtataatcttgcttgttagaggcaaagctgtcgacaaccgtctttaagtcaagttca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
5561773 |
actaaatacggatttacattcattgataatagcaccatattccatatgatctttcttgttagaggcaaagctgtcgacaaccttctttgagtcaagatca |
5561872 |
T |
|
| Q |
104 |
aagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcacctcatgcttgtgctcaaatcatt |
203 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |||| |
|
|
| T |
5561873 |
aagtctattggtcctaacctcaagtcatgaacccattgaagagctgataacaaacccaacgcttctccaatatgcatctcgtgcttgtgctcaaaccatt |
5561972 |
T |
|
| Q |
204 |
ccgtttttgcaatcacaaac |
223 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
5561973 |
ccgtttttgcaagcacaaac |
5561992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 44328381 - 44328162
Alignment:
| Q |
4 |
actaaatacggatttacattcattgataatagcaccatattccgtataatcttgcttgttagaggcaaagctgtcgacaaccgtctttaagtcaagttca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||| ||||||||||| ||| | |||| | |||| |
|
|
| T |
44328381 |
actaaatacggatttacattcattgataatagcaccatattctgtataatcttgcatgtcagacgcaaagttgtcgacaaccttctctgagtctaattca |
44328282 |
T |
|
| Q |
104 |
aagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcacctcatgcttgtgctcaaatcatt |
203 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| |||||||||||||||| |||| |
|
|
| T |
44328281 |
aagtctgttggtcctaacctcgattcatgaacccattgaagagctgataagaaacccaacatttctctaatatccacttcatgcttgtgctcaagacatt |
44328182 |
T |
|
| Q |
204 |
ccgtttttgcaatcacaaac |
223 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44328181 |
tcgtttttgcaatcacaaac |
44328162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 13501541 - 13501325
Alignment:
| Q |
6 |
taaatacggatttacattcattgataatagcaccatattccgtataatcttgcttgttagaggcaaagctgtcgacaaccgtctttaagtcaagttcaaa |
105 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13501541 |
taaatacagatttacattcattaataatagcaccatattacgtatgatcttgcttgttagaggcaaagctgtcgacaaccttctttaagtcaagttcaaa |
13501442 |
T |
|
| Q |
106 |
gtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcacctcatgcttgtgctcaaatcattcc |
205 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
13501441 |
gtctattggtcctaacctcaagtcatgaacccattgaaaagctgataacaaacccaacgcttctccaatattcacctcatgcttgtgctcaaaccattcc |
13501342 |
T |
|
| Q |
206 |
gtttttgcaatcacaaa |
222 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
13501341 |
atttttgcaagcacaaa |
13501325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 10673337 - 10673286
Alignment:
| Q |
129 |
catgaacccattgaagagctgataacaaacccaaagcttctccaatatgcac |
180 |
Q |
| |
|
||||||| ||||||||||| || |||||||| ||||||||||||| |||||| |
|
|
| T |
10673337 |
catgaactcattgaagagccgacaacaaacctaaagcttctccaacatgcac |
10673286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 10698818 - 10698869
Alignment:
| Q |
129 |
catgaacccattgaagagctgataacaaacccaaagcttctccaatatgcac |
180 |
Q |
| |
|
||||||| ||||||||||| || |||||||| ||||||||||||| |||||| |
|
|
| T |
10698818 |
catgaactcattgaagagccgacaacaaacctaaagcttctccaacatgcac |
10698869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 10886977 - 10886926
Alignment:
| Q |
129 |
catgaacccattgaagagctgataacaaacccaaagcttctccaatatgcac |
180 |
Q |
| |
|
||||||| ||||||||||| || |||||||| ||||||||||||| |||||| |
|
|
| T |
10886977 |
catgaactcattgaagagccgacaacaaacctaaagcttctccaacatgcac |
10886926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 10912588 - 10912639
Alignment:
| Q |
129 |
catgaacccattgaagagctgataacaaacccaaagcttctccaatatgcac |
180 |
Q |
| |
|
||||||| ||||||||||| || |||||||| ||||||||||||| |||||| |
|
|
| T |
10912588 |
catgaactcattgaagagccgacaacaaacctaaagcttctccaacatgcac |
10912639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 28544164 - 28543945
Alignment:
| Q |
4 |
actaaatacggatttacattcattgataatagcaccatattccgtataatcttgcttgttagaggcaaagctgtcgacaaccgtctttaagtcaagttca |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| | |
|
|
| T |
28544164 |
actaaatacggatttacattcatggataatagcaccatattccgtataatcttgcttgttagaggcaaagctgttgacaaccttctttgagtcaagttaa |
28544065 |
T |
|
| Q |
104 |
aagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcacctcatgcttgtgctcaaatcatt |
203 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
28544064 |
aagtatattggtcttaacctcaattcatgaatccattgaagagctgataacaaacccaacgcttctccaatatgcaccccatgcttgtgctaaaaacatt |
28543965 |
T |
|
| Q |
204 |
ccgtttttgcaatcacaaac |
223 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
28543964 |
ccgtttttgcaagcacaaac |
28543945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 29992075 - 29991881
Alignment:
| Q |
4 |
actaaatacggatttacattcattgataatagcaccatattccgtataatcttgcttgttagaggcaaagctgtcgacaaccgtctttaagtcaagttca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
29992075 |
actaaatacggatttacattcattgataatagcaccatattccgtatgatcttgcttgctagaggcaaagctgtcgacaaccttctttgagtcaagttca |
29991976 |
T |
|
| Q |
104 |
aagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcacctcatgcttgtgctcaaa |
198 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
29991975 |
aagtctattggttctaacctcaagtcatgaacccattgaagagctgataacaaacccaacgcttctccaatatgcacctcatccttgtgctcaaa |
29991881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 24448455 - 24448574
Alignment:
| Q |
65 |
gaggcaaagctgtcgacaaccgtctttaagtcaagttcaaagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaag |
164 |
Q |
| |
|
|||||||| ||||| || | | ||||| | ||||||||||| ||||| ||||||| || || |||| |||||||||||||| || || | ||| |||| |
|
|
| T |
24448455 |
gaggcaaaactgtcaaccagcttctttgaatcaagttcaaaatctatcggtcctagacttaacgcatggacccattgaagagccgacaatagacctaaag |
24448554 |
T |
|
| Q |
165 |
cttctccaatatgcacctca |
184 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
24448555 |
ctttttcaatatgcacctca |
24448574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 19934095 - 19934180
Alignment:
| Q |
95 |
tcaagttcaaagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcac |
180 |
Q |
| |
|
|||||||| || ||||| | ||||||| || ||||| |||||||||||||||| ||||||||||| | ||| ||||||||||| |
|
|
| T |
19934095 |
tcaagttcgaactctatagttcctaactgtaactcatgcacccattgaagagctgtcaacaaacccaatgtttcaccaatatgcac |
19934180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 25586035 - 25586221
Alignment:
| Q |
17 |
ttacattcattgataatagcaccatattccgtataatcttgcttgttagaggcaaagctgtcgacaaccgtctttaagtcaagttcaaagtctattggtc |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |
|
|
| T |
25586035 |
ttacattcattaataatagcaccatattccgtataatcttgcttgttagaggcaaagctgtcgacaaccttcttcgagtcaagttcaaagtctattgatg |
25586134 |
T |
|
| Q |
117 |
ctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcacctcatgcttgtgctcaaatcattcc |
205 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
25586135 |
ctaac--caattcatgaacccattgaatagctgataacaaacccaacgcttctcaaatatgcacctcatgcttgtgctcaaaacattcc |
25586221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 5583929 - 5583844
Alignment:
| Q |
95 |
tcaagttcaaagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcac |
180 |
Q |
| |
|
|||||||| || ||||| || |||||| || ||||| |||||||||||||||| |||||||| || ||||| ||||||||||| |
|
|
| T |
5583929 |
tcaagttcgaactctataggccctaactgtaactcatgcacccattgaagagctgtcaacaaacctaatgcttcaccaatatgcac |
5583844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 20351399 - 20351484
Alignment:
| Q |
95 |
tcaagttcaaagtctattggtcctaacctcaattcatgaacccattgaagagctgataacaaacccaaagcttctccaatatgcac |
180 |
Q |
| |
|
|||||||| || ||||| | ||||||| || ||||| |||||||||||||||| ||||||||||| | ||| ||||||||||| |
|
|
| T |
20351399 |
tcaagttcgaactctatagatcctaactgtaactcatgcacccattgaagagctgtcaacaaacccaatggttcaccaatatgcac |
20351484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 4424734 - 4424776
Alignment:
| Q |
4 |
actaaatacggatttacattcattgataatagcaccatattcc |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4424734 |
actaaatacggatttacattcattgataatagcaccatattcc |
4424776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University