View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7384_low_4 (Length: 354)
Name: NF7384_low_4
Description: NF7384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7384_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 13260780 - 13261118
Alignment:
| Q |
1 |
actcgtctctacttcattaggatcagtaggcagaactagaactggtgccccatcagaatcttcaaaactagatgaatgaacctcatctagagtgtcttga |
100 |
Q |
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| T |
13260780 |
actcgtctctacttcattaggatcaataggcagaacttgaactggtgccccatcagaatcttcaaaactagatgaatgaacctcatctagagtgtcttga |
13260879 |
T |
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| Q |
101 |
acagccacattagtgttctcgtcggtattttccacacatgtcgatgcatcaaggcacattgcaccaggttcgtccatagcaccattattatcatccaaat |
200 |
Q |
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| T |
13260880 |
acagccacattagtgttctcgtcggtattttccacacatgtcgatgcatcaaggcacattgcagcaggttcgtccatagcaccattgttatcatccaaat |
13260979 |
T |
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| Q |
201 |
tttgaacttgttcaaccgaatggccactggattccttggaagaaacatctaaaatgttcacactatacaaggatttatcactcactatctcagcttctcc |
300 |
Q |
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| T |
13260980 |
tttgaacttgttcaaccgaacggccactggattccttggaagaaacatctaaagaattcacactatacaaggatttatcactcactatctcagcttctcc |
13261079 |
T |
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| Q |
301 |
ctcaaccatattttcatcttcgcttggtgttgcatgatg |
339 |
Q |
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| T |
13261080 |
ctcaaccatattttcatcttcacttggtgttgcatgatg |
13261118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 13269846 - 13270043
Alignment:
| Q |
20 |
ggatcagtaggcagaactagaactggtgccccatcagaatcttcaaaactagatgaatgaacctcatctagagtgtcttgaacagccacattagtgttct |
119 |
Q |
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| T |
13269846 |
ggatcagtaggcagaacttgaagtgctgtcccatctgaatcatcaaaactacacgaacaaacctcatctagattatcttcaacaggcacatcggtgttct |
13269945 |
T |
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| Q |
120 |
cgtcggtattttccacacatgtcgatgcatcaaggcacattgcaccaggttcgtccatagcaccattattatcatccaaattttgaacttgttcaacc |
217 |
Q |
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| T |
13269946 |
catcagtatttttcgcacatgtggacacatcaaagcacattgcagcagcttcaacttgaacacaattattataatccaaattgggaacgtgttcaacc |
13270043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 13269382 - 13269471
Alignment:
| Q |
42 |
ctggtgccccatcagaatcttcaaaactagatgaatgaacctcatctagagtgtcttgaacagccacattagtgttctcgtcggtatttt |
131 |
Q |
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| T |
13269382 |
ctggtgtcccatctgaatcttcaaagttagataaaagaacctcatgtagaatatcttcaaaagccacatctgtgttctcatcagtatttt |
13269471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 13259827 - 13259891
Alignment:
| Q |
184 |
attattatcatccaaattttgaacttgttcaaccgaatggccactggattccttggaagaaacat |
248 |
Q |
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| T |
13259827 |
attattatcatccaatttgtgaagttgttcaaccaaacagccacttgattcctttggagaaacat |
13259891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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