View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7384_low_6 (Length: 325)

Name: NF7384_low_6
Description: NF7384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7384_low_6
NF7384_low_6
[»] chr4 (17 HSPs)
chr4 (30-147)||(46550706-46550823)
chr4 (40-147)||(17056615-17056722)
chr4 (33-147)||(47541809-47541925)
chr4 (40-147)||(41464802-41464911)
chr4 (40-147)||(52920087-52920197)
chr4 (45-140)||(15827131-15827229)
chr4 (49-147)||(47833504-47833603)
chr4 (179-229)||(46550626-46550676)
chr4 (280-325)||(33878620-33878665)
chr4 (279-323)||(33879209-33879253)
chr4 (39-147)||(36364868-36364972)
chr4 (40-147)||(39503504-39503615)
chr4 (40-147)||(20679841-20679951)
chr4 (52-137)||(46381481-46381568)
chr4 (179-225)||(47541735-47541781)
chr4 (181-223)||(47732466-47732508)
chr4 (75-147)||(42969971-42970043)
[»] chr1 (16 HSPs)
chr1 (40-147)||(16253029-16253136)
chr1 (40-147)||(24241478-24241585)
chr1 (40-147)||(41942781-41942888)
chr1 (40-147)||(21356794-21356901)
chr1 (40-147)||(34773420-34773528)
chr1 (40-147)||(39744169-39744276)
chr1 (34-138)||(38746028-38746133)
chr1 (40-147)||(2344969-2345077)
chr1 (40-118)||(48503922-48504000)
chr1 (179-232)||(24241614-24241667)
chr1 (181-225)||(34773345-34773389)
chr1 (40-142)||(7101359-7101464)
chr1 (182-223)||(38745959-38746000)
chr1 (183-223)||(8971569-8971609)
chr1 (179-223)||(41942916-41942960)
chr1 (179-223)||(16253166-16253210)
[»] chr3 (17 HSPs)
chr3 (40-147)||(44880254-44880361)
chr3 (36-147)||(1994850-1994961)
chr3 (40-147)||(22220210-22220318)
chr3 (41-147)||(2008400-2008508)
chr3 (35-147)||(22831174-22831286)
chr3 (40-147)||(39056875-39056981)
chr3 (179-223)||(25199079-25199123)
chr3 (40-116)||(26466362-26466438)
chr3 (180-223)||(22220346-22220389)
chr3 (180-224)||(2008537-2008581)
chr3 (182-222)||(22831103-22831143)
chr3 (60-147)||(28297695-28297782)
chr3 (179-229)||(45805449-45805499)
chr3 (40-97)||(45805583-45805640)
chr3 (280-325)||(49850835-49850880)
chr3 (280-325)||(49851426-49851471)
chr3 (179-224)||(1994780-1994825)
[»] chr7 (11 HSPs)
chr7 (36-147)||(8541427-8541539)
chr7 (40-147)||(34998528-34998637)
chr7 (40-147)||(10544991-10545100)
chr7 (40-119)||(39187986-39188065)
chr7 (40-147)||(45627414-45627524)
chr7 (45-97)||(32676800-32676852)
chr7 (30-86)||(15878797-15878853)
chr7 (179-225)||(8541565-8541611)
chr7 (179-223)||(30783412-30783456)
chr7 (179-223)||(34998665-34998709)
chr7 (88-147)||(40076693-40076753)
[»] chr8 (20 HSPs)
chr8 (36-147)||(42056676-42056787)
chr8 (28-224)||(30208187-30208380)
chr8 (36-135)||(39402038-39402140)
chr8 (35-147)||(5594779-5594891)
chr8 (41-147)||(1162117-1162222)
chr8 (40-147)||(40719895-40720005)
chr8 (35-147)||(35179155-35179268)
chr8 (37-147)||(31333162-31333273)
chr8 (58-147)||(42921385-42921474)
chr8 (280-325)||(38460884-38460929)
chr8 (182-222)||(5594922-5594962)
chr8 (280-322)||(38460427-38460469)
chr8 (84-147)||(30362018-30362082)
chr8 (40-140)||(36132676-36132776)
chr8 (179-223)||(39401955-39401999)
chr8 (179-223)||(40719821-40719865)
chr8 (179-225)||(1162043-1162089)
chr8 (179-223)||(34173559-34173603)
chr8 (179-223)||(34514581-34514625)
chr8 (179-226)||(35179296-35179341)
[»] chr5 (24 HSPs)
chr5 (40-147)||(33758794-33758901)
chr5 (59-141)||(23151436-23151518)
chr5 (35-147)||(2976446-2976556)
chr5 (49-147)||(34849451-34849550)
chr5 (50-147)||(30319817-30319915)
chr5 (40-147)||(20524604-20524711)
chr5 (40-147)||(10719746-10719854)
chr5 (60-147)||(37872201-37872291)
chr5 (37-77)||(37872302-37872342)
chr5 (33-145)||(8026460-8026577)
chr5 (48-147)||(3454259-3454358)
chr5 (181-224)||(36442660-36442703)
chr5 (89-147)||(42285218-42285277)
chr5 (284-325)||(13869240-13869281)
chr5 (280-325)||(13869829-13869874)
chr5 (284-325)||(27640875-27640916)
chr5 (179-223)||(10719883-10719927)
chr5 (179-226)||(3454387-3454434)
chr5 (179-225)||(16778273-16778319)
chr5 (180-222)||(21239003-21239045)
chr5 (182-223)||(20654461-20654502)
chr5 (280-325)||(27641433-27641478)
chr5 (179-223)||(23145929-23145973)
chr5 (179-223)||(37872129-37872173)
[»] chr2 (16 HSPs)
chr2 (40-147)||(3870024-3870135)
chr2 (40-147)||(11028779-11028887)
chr2 (40-133)||(36400857-36400952)
chr2 (34-147)||(28734070-28734183)
chr2 (40-147)||(37721449-37721557)
chr2 (40-147)||(38879517-38879625)
chr2 (40-147)||(3647418-3647526)
chr2 (179-223)||(3870164-3870208)
chr2 (41-147)||(30706149-30706258)
chr2 (179-223)||(34480055-34480099)
chr2 (40-147)||(6512079-6512191)
chr2 (180-223)||(36400993-36401036)
chr2 (86-147)||(3949317-3949378)
chr2 (179-223)||(30706078-30706122)
chr2 (179-224)||(37721585-37721630)
chr2 (179-223)||(9009119-9009163)
[»] scaffold0095 (2 HSPs)
scaffold0095 (36-135)||(35362-35464)
scaffold0095 (179-223)||(35503-35547)
[»] chr6 (4 HSPs)
chr6 (40-147)||(2141240-2141348)
chr6 (35-147)||(7080148-7080262)
chr6 (40-134)||(25336928-25337023)
chr6 (181-221)||(17852650-17852690)
[»] scaffold0288 (2 HSPs)
scaffold0288 (40-119)||(18084-18163)
scaffold0288 (179-223)||(17977-18022)
[»] scaffold0009 (1 HSPs)
scaffold0009 (32-119)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (40-147)||(57-165)
[»] scaffold0386 (2 HSPs)
scaffold0386 (279-325)||(691-737)
scaffold0386 (280-325)||(1288-1333)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 46550823 - 46550706
Alignment:
Q  30 aataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatc 129  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46550823 aataatgaaatattcttccatggtcacaagaccaaatcaataatgtttaaacacatacataaaaagattctcctctaaatattcaatcatcatttttatc 46550724  T
Q  130 aatttcctctttattatt 147  Q
    ||||| ||||||||||||    
T  46550723 aattttctctttattatt 46550706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 17056615 - 17056722
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata-aaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 138  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||  ||||||| ||||||  |||||||||||||||||    
T  17056615 tattcttccatggtcacaagaccaaatcaatagtgtttgaatacacacatataaaaaattgtccttaaaatatttaatcat-ttttttatcaatttcctc 17056713  T
Q  139 tttattatt 147  Q
    |||||||||    
T  17056714 tttattatt 17056722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 47541925 - 47541809
Alignment:
Q  33 aaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcatttttatca 130  Q
    |||||||||||||| |||| |||||||| |||||||||||| |||| | |||||||  |||||||||| ||||| ||||||||||||||| |||||||||    
T  47541925 aaggagatattctttcatgatcacaagatcaaatcaataatatttggacacacacacataaaaagattttcctcaaaatattcaatcatcttttttatca 47541826  T
Q  131 atttcctctttattatt 147  Q
    |||||||  ||||||||    
T  47541825 atttccttcttattatt 47541809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 41464911 - 41464802
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 137  Q
    ||||||| ||||||||||||| ||||||||||||  || ||  ||||||||||||||||||||| || ||||| ||||||||| |||||||||||||| |    
T  41464911 tattctttcatggtcacaagatcaaatcaataatacttaaacatacacacataaaaagattctcttcaaaatactcaatcatcttttttatcaatttctt 41464812  T
Q  138 ctttattatt 147  Q
    ||||||||||    
T  41464811 ctttattatt 41464802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 52920197 - 52920087
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcattttt-atcaatttcc 136  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | |  ||||||||||  | |  ||||||||||||||  ||||| |||||||| |    
T  52920197 tattcttccatggtcacaagaccaaatcaataatgtttaaatacatataaataaaaagatttacttaaaaatattcaatcatttttttttatcaattttc 52920098  T
Q  137 tctttattatt 147  Q
    |||||||||||    
T  52920097 tctttattatt 52920087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 15827229 - 15827131
Alignment:
Q  45 ttccatggtcacaagaccaaatcaataatgtttgaataca--cacataaaaagattctcctctaaatattcaatcatcattttt-atcaatttcctctt 140  Q
    |||||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||  || ||||||||||| ||  ||||| |||||||| |||||    
T  15827229 ttccatggtcacaagaccgaatcaataatatttgaatacacacacataaaaagattcttgtcaaaatattcaattattttttttcatcaattttctctt 15827131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 47833504 - 47833603
Alignment:
Q  49 atggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattat 146  Q
    |||||| |||||||||||| ||| || ||| |  ||||||||||||||||   ||||| |||||||||||||| | ||||||||||||||||||||||||    
T  47833504 atggtcgcaagaccaaatctatagtggttggacatacacacataaaaagaccatcctcaaaatattcaatcatta-ttttatcaatttcctctttattat 47833602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 46550676 - 46550626
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctcatagaa 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  46550676 accaaacactttttctttggtcttgtgaccatattagaatttctcttagaa 46550626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 33878620 - 33878665
Alignment:
Q  280 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcat 325  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  33878620 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcat 33878665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 33879253 - 33879209
Alignment:
Q  279 ggaaacgtacataacatgtgacaattacaaacatccaatgaaatc 323  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  33879253 ggaaacgtacataacatgtggcacttacaaacatccaatgaaatc 33879209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 36364972 - 36364868
Alignment:
Q  39 atattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 138  Q
    ||||| || ||||||| ||||||||||||||||||||||| | ||||| ||||||| ||  ||||  ||||||    |||| |||||||||||||| |||    
T  36364972 atattgttgcatggtcgcaagaccaaatcaataatgtttggacacacatataaaaatatggtccttaaaatat----tcattatttttatcaattttctc 36364877  T
Q  139 tttattatt 147  Q
    |||| ||||    
T  36364876 tttactatt 36364868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 39503615 - 39503504
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaa--tcatcatttttatcaatttc 135  Q
    |||||||| ||||||||||||| ||||||||| |||||||| ||  ||||||||||||||  || |  ||||||| ||  |  |  ||||||||||||||    
T  39503615 tattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataaaaagatgatctttaaaatatttaatttttttttttttatcaatttc 39503516  T
Q  136 ctctttattatt 147  Q
    ||||||||||||    
T  39503515 ctctttattatt 39503504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 20679951 - 20679841
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata---aaaagattctcctctaaatattcaatcatcatttttatcaatttcc 136  Q
    ||||||| ||||||| ||||| |||||||||| |||||| | ||||||| |   |||| ||  || |  ||||||||||| ||  |||||||||||||||    
T  20679951 tattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacataaaaaaaatggtctttaaaatattcaattattttttttatcaatttcc 20679852  T
Q  137 tctttattatt 147  Q
    |||||||||||    
T  20679851 tctttattatt 20679841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 46381481 - 46381568
Alignment:
Q  52 gtcacaagaccaaatcaataatgtttgaatacaca--cataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 137  Q
    ||||||||||||||| |||| |||||||  |||||  |||||| ||||| ||||  ||| ||||||||||  ||||||||||||||||    
T  46381481 gtcacaagaccaaataaatagtgtttgagcacacatacataaagagattatcctaaaaacattcaatcattttttttatcaatttcct 46381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 47541781 - 47541735
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 225  Q
    ||||||||||||||||||| ||  |||||||||||| ||||||||||    
T  47541781 accaaacactttttctttgatctcgtgaccatattagaatttctcat 47541735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 47732466 - 47732508
Alignment:
Q  181 caaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||| |||||||||| |||||||||||||||| ||||||||    
T  47732466 caaacaatttttctttgatcctgtgaccatattagaatttctc 47732508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 42969971 - 42970043
Alignment:
Q  75 tttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 147  Q
    |||||| ||||  ||||||||||| ||||  |||||||||||| |  |||||||||||||  |||||||||||    
T  42969971 tttgaacacacgtataaaaagattatccttaaaatattcaatctttttttttatcaattttatctttattatt 42970043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 16253029 - 16253136
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 139  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||     
T  16253029 tattcttccatgttcacaagaccaaatcaataatgtttggagacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 16253128  T
Q  140 ttattatt 147  Q
    ||||||||    
T  16253129 ttattatt 16253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 24241478 - 24241585
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 139  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||     
T  24241478 tattcttccatggtcacatgaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 24241577  T
Q  140 ttattatt 147  Q
    ||||||||    
T  24241578 ttattatt 24241585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 41942781 - 41942888
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 139  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||     
T  41942781 tattctttcatggtcacaagaccaaatcaataatgtttggacacatacataaaaagattctcttcgaaatattcaatcatcatttttatcaatttcctcc 41942880  T
Q  140 ttattatt 147  Q
    ||||||||    
T  41942881 ttattatt 41942888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 21356794 - 21356901
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 139  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||| ||||||||||||| |||     
T  21356794 tattcttttatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattctcttcaaaatattcaatcatcttttttatcaattttctca 21356893  T
Q  140 ttattatt 147  Q
    ||||||||    
T  21356894 ttattatt 21356901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 34773528 - 34773420
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 137  Q
    |||||||||||| |||||||||||| ||||||||||||| |  |||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  34773528 tattcttccatgatcacaagaccaactcaataatgtttgcacatacacacataaaaagattctcctcaaaatattcaatcatattttttattaatttcct 34773429  T
Q  138 ctttattatt 147  Q
     |||||||||    
T  34773428 -tttattatt 34773420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 39744276 - 39744169
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 139  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||  |||| ||||||||  ||||||||| |||||||     
T  39744276 tattcttctatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattcttctcagaatagtcaatcattttttttatcattttcctcc 39744177  T
Q  140 ttattatt 147  Q
    ||||||||    
T  39744176 ttattatt 39744169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 38746133 - 38746028
Alignment:
Q  34 aggagatattcttccatggtcacaagaccaaatcaataatgtttga-atacacacataaaaagattctcctctaaatattcaatcatcatttttatcaat 132  Q
    |||||| |||||||||| |||||||||||||||||||||| || || | |||| |||||| ||||||||||| ||||||||||||||| || || |||||    
T  38746133 aggagacattcttccatcgtcacaagaccaaatcaataattttggacacacacccataaatagattctcctcaaaatattcaatcatctttgttttcaat 38746034  T
Q  133 ttcctc 138  Q
    ||||||    
T  38746033 ttcctc 38746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 2344969 - 2345077
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 137  Q
    ||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| ||| || |  ||| ||||||||||| ||||||||||||||||    
T  2344969 tattcttccttggtcacaagaccaaatcaataatgtttggataagcacacataaaaa-attttctttaaaaaattcaatcatcttttttatcaatttcct 2345067  T
Q  138 ctttattatt 147  Q
    | || |||||    
T  2345068 ccttcttatt 2345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 48503922 - 48504000
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca 118  Q
    |||||||||||| ||| ||||||||||||||||| |||| | ||||| |||||| ||||||| || ||||| |||||||    
T  48503922 tattcttccatgttcataagaccaaatcaataatatttggacacacatataaaaggattctcatcaaaatactcaatca 48504000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 24241614 - 24241667
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctcatagaataa 232  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| || |||||    
T  24241614 accaaatactttttctttggtcctgtgaccatattagaatttctcttataataa 24241667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 34773389 - 34773345
Alignment:
Q  181 caaacactttttctttggtcctgtgaccatattaaaatttctcat 225  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  34773389 caaacactttttctttggtcctgtaaccatattagaatttctcat 34773345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 7101464 - 7101359
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttga----atacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 135  Q
    |||||| ||||| ||| ||||||||||||||| |||| ||    | ||||||||||||||||  ||||  ||||||||||||||   |||||||||||||    
T  7101464 tattctcccatgatcataagaccaaatcaatagtgttggaacatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttc 7101366  T
Q  136 ctcttta 142  Q
    |||||||    
T  7101365 ctcttta 7101359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 38746000 - 38745959
Alignment:
Q  182 aaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  38746000 aaacactttttctttggccgtgtgaccatattaaaatttctc 38745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 8971569 - 8971609
Alignment:
Q  183 aacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  8971569 aacactttttttttggtcctgtgaccatattagaatttctc 8971609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 41942916 - 41942960
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||    
T  41942916 accaaacactttatctttggtcgtgtgaccatattagaatttctc 41942960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 16253166 - 16253210
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    ||||||||||||||||||| || ||||| ||||||| ||||||||    
T  16253166 accaaacactttttctttgatcatgtgatcatattagaatttctc 16253210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 44880254 - 44880361
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 139  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||     
T  44880254 tattctttcatggtcacaagaccaaatcaataatgtttgaacacacacataaaacgattctcctcaaaatattcagtcatcttttttatcaatttcctcc 44880353  T
Q  140 ttattatt 147  Q
    ||||||||    
T  44880354 ttattatt 44880361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 1994961 - 1994850
Alignment:
Q  36 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 135  Q
    |||||||||| | |||||||||||||||||||||||||||||| | | ||||| ||||||||||||||  ||||||||||||||| |||||||||||| |    
T  1994961 gagatattctactatggtcacaagaccaaatcaataatgtttggacaaacacacaaaaagattctcctgaaaatattcaatcatcttttttatcaattac 1994862  T
Q  136 ctctttattatt 147  Q
    ||||||||||||    
T  1994861 ctctttattatt 1994850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 22220210 - 22220318
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 138  Q
    |||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||  |||||||||||||||||    
T  22220210 tattcttccatggtcaaaagatcaaatcaataatgtttgtacacacacataaaaagattcttctcaaaatattcaatcatctttttttatcaatttcctc 22220309  T
Q  139 tttattatt 147  Q
     ||||||||    
T  22220310 cttattatt 22220318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 2008400 - 2008508
Alignment:
Q  41 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacata--aaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 138  Q
    ||||||||||| ||||||||||||||||||||| |||| | |||||||||  |||||||||||||| ||||||||||||||| ||||||||||||| |||    
T  2008400 attcttccatgatcacaagaccaaatcaataatatttggacacacacatataaaaagattctcctcaaaatattcaatcatcttttttatcaattttctc 2008499  T
Q  139 tttattatt 147  Q
     ||||||||    
T  2008500 cttattatt 2008508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 22831286 - 22831174
Alignment:
Q  35 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 134  Q
    |||||||||||||  |||||||||||| ||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||    
T  22831286 ggagatattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcacttt 22831187  T
Q  135 cctctttattatt 147  Q
    |||| ||||||||    
T  22831186 cctccttattatt 22831174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 39056981 - 39056875
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 139  Q
    |||||||||||| || |||||||||||| |||||||||| | ||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| |||     
T  39056981 tattcttccatgatcgcaagaccaaatctataatgtttggacacacacataaaaagattttcctcaaaatattcaatcatc-tttttatcgattttctcc 39056883  T
Q  140 ttattatt 147  Q
    ||| ||||    
T  39056882 ttaatatt 39056875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 25199079 - 25199123
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  25199079 accaaacactttttctttggtcctgtgaccatattagaatttctc 25199123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 26466438 - 26466362
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaat 116  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||| | |||||||||||||  |  |||||||||||    
T  26466438 tattcttccatggtcacaagatcaaattaataatgtttgaacacatatataaaaagattctttttaaaatattcaat 26466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 22220346 - 22220389
Alignment:
Q  180 ccaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  22220346 ccaaatactttttctttggtcctgtgaccatattaaaatttctc 22220389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 2008537 - 2008581
Alignment:
Q  180 ccaaacactttttctttggtcctgtgaccatattaaaatttctca 224  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  2008537 ccaaacactatttctttggtcctgtgaccatattagaatttctca 2008581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 22831143 - 22831103
Alignment:
Q  182 aaacactttttctttggtcctgtgaccatattaaaatttct 222  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  22831143 aaacactttttctttgatcctgtgaccatattaaaatttct 22831103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 28297695 - 28297782
Alignment:
Q  60 accaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 147  Q
    ||||||||||||| ||||| | | | | ||||||||||||||||  | |||||| |||||   |||||||||||||||||||||||||    
T  28297695 accaaatcaataaagtttggacatatatataaaaagattctccttaacatattcgatcatttcttttatcaatttcctctttattatt 28297782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 45805499 - 45805449
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctcatagaa 229  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  45805499 accaaacactttttatttggtcatgtgaccatattagaatttctcagagaa 45805449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 45805640 - 45805583
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagat 97  Q
    |||||||||||| | |||||| |||||||||| |||||| | ||||||||||||||||    
T  45805640 tattcttccatgattacaagatcaaatcaatagtgtttgcacacacacataaaaagat 45805583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 49850835 - 49850880
Alignment:
Q  280 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcat 325  Q
    ||||||||||||||||||| || |||||||||| ||||||||||||    
T  49850835 gaaacgtacataacatgtggcacttacaaacattcaatgaaatcat 49850880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 49851471 - 49851426
Alignment:
Q  280 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcat 325  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||    
T  49851471 gaaacatacataacatgtggcacttacaaacatccaatgaaatcat 49851426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 1994825 - 1994780
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctca 224  Q
    |||||| ||| ||||||||||| ||||||||||||| |||||||||    
T  1994825 accaaatactatttctttggtcatgtgaccatattagaatttctca 1994780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 8541427 - 8541539
Alignment:
Q  36 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatca-tttttatcaattt 134  Q
    |||||||||||  |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | |||||||||||||    
T  8541427 gagatattcttttatggtcacaagaccaaatcaataatgtttgaacacacacgtaaaaagattctcctcaaaatattcaatcattattttttatcaattt 8541526  T
Q  135 cctctttattatt 147  Q
    |||| ||||||||    
T  8541527 cctccttattatt 8541539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 34998528 - 34998637
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata--aaaagattctcctctaaatattcaatcatcatttttatcaatttcct 137  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||  |||||||||||||| |||||||||||||| |||||||||||||| ||    
T  34998528 tattcttccatggtcacaagaccaaatcaataatgtttggacacacacatataaaaagattctcctcaaaatattcaatcattatttttatcaattttct 34998627  T
Q  138 ctttattatt 147  Q
    | ||||||||    
T  34998628 ccttattatt 34998637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 10544991 - 10545100
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatt--tttatcaatttcct 137  Q
    |||||||||| | |||||||||| |||||||| | |||| | ||||||||||||||||| |  |  ||||||||||||||  ||  ||||||||||||||    
T  10544991 tattcttccacgatcacaagaccgaatcaatagtatttggagacacacataaaaagattatttttaaaatattcaatcattttttatttatcaatttcct 10545090  T
Q  138 ctttattatt 147  Q
    ||||||||||    
T  10545091 ctttattatt 10545100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 39188065 - 39187986
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 119  Q
    |||||||||||||||| ||||||||||||||| | |||| | |||| |||||||||||  ||||  ||||||||||||||    
T  39188065 tattcttccatggtcagaagaccaaatcaatagtatttggacacacgcataaaaagatggtccttaaaatattcaatcat 39187986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 45627524 - 45627414
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatg-tttga-atacacacat-aaaaagattctcctctaaatattcaatcatcatttttatcaatttcc 136  Q
    |||||||||||||||||| ||||||||||||| || ||||| | |||||||| ||||| ||| ||||  ||||||| ||||||  |||||||||||||||    
T  45627524 tattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacataaaaaaaattgtccttaaaatatttaatcattttttttatcaatttcc 45627425  T
Q  137 tctttattatt 147  Q
    | | |||||||    
T  45627424 tttatattatt 45627414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 32676800 - 32676852
Alignment:
Q  45 ttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagat 97  Q
    ||||||||||||||||||||||||||| |||||| |||||||  |||||||||    
T  32676800 ttccatggtcacaagaccaaatcaatagtgtttggatacacatgtaaaaagat 32676852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 15878853 - 15878797
Alignment:
Q  30 aataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacaca 86  Q
    ||||| |||||||||||| || ||||||||||||||||||||  ||||| |||||||    
T  15878853 aataaagagatattcttctattgtcacaagaccaaatcaatagcgtttggatacaca 15878797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 8541565 - 8541611
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 225  Q
    |||||||||| |||||||| |||| | ||||||||||||||||||||    
T  8541565 accaaacactatttctttgatcctataaccatattaaaatttctcat 8541611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 30783456 - 30783412
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||||||    
T  30783456 accaaacactttttatttggtcatgtgaccattttagaatttctc 30783412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 34998665 - 34998709
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||| |||||||||||| || ||||||||||||| ||||||||    
T  34998665 accaaatactttttctttgatcatgtgaccatattagaatttctc 34998709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 40076753 - 40076693
Alignment:
Q  88 ataaaaagattctcctctaaatattcaatcatcattttt-atcaatttcctctttattatt 147  Q
    |||||||||||||  |  ||||||||||||||| ||||| |||||||||||| ||||||||    
T  40076753 ataaaaagattcttttaaaaatattcaatcatctttttttatcaatttcctccttattatt 40076693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 42056676 - 42056787
Alignment:
Q  36 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |  ||||||||||||||| |||||||||||||     
T  42056676 gagatattcttccatggtcacaagaccaaatcaataatgtttggacacaaacataaaaagattctctttaaaatattcaatcatcttttttatcaatttt 42056775  T
Q  136 ctctttattatt 147  Q
    ||| ||||||||    
T  42056776 ctccttattatt 42056787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 30208187 - 30208380
Alignment:
Q  28 agaataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaatcatcatttt 125  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||| | ||  | ||||||||||||||||||| ||||||||||||||| ||||    
T  30208187 agaatatggaggtattcttccatggtcataagaccaaatcaataatgtttggacacatatacataaaaagattctcctc-aaatattcaatcatcttttt 30208285  T
Q  126 tatcaatttcctctttattattnnnnnnntacttctttannnnnnnnnnnnnnaccaaacactttttctttggtcctgtgaccatattaaaatttctca 224  Q
    ||||||||||||| ||||||||        |||||||||              |||||||||||||||||||||||||||||||||||| |||||||||    
T  30208286 tatcaatttcctccttattattaaaaaaacacttcttta----tgtgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctca 30208380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 39402140 - 39402038
Alignment:
Q  36 gagatattcttccatggtcacaagaccaaatcaataatgtttga--atacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 132  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  39402140 gagatattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 39402041  T
Q  133 ttc 135  Q
    |||    
T  39402040 ttc 39402038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 5594779 - 5594891
Alignment:
Q  35 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 134  Q
    |||||||||||||  |||||||||||| ||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||    
T  5594779 ggagatattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcacttt 5594878  T
Q  135 cctctttattatt 147  Q
    |||| ||||||||    
T  5594879 cctccttattatt 5594891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 1162222 - 1162117
Alignment:
Q  41 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctt 140  Q
    |||| |||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||||||||  || || ||||||||||||||||    
T  1162222 attcgtccatgatcacaagaccaaatcagtaatatttgaacacacacataaaaggattctcctcaaaatattcaat-gtctttcttatcaatttcctctt 1162124  T
Q  141 tattatt 147  Q
    |||||||    
T  1162123 tattatt 1162117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 40720005 - 40719895
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatc-atttttatcaatttcc 136  Q
    |||||||||||||||| ||||  |||| ||||||||||| | |||||||  |||||||||||||||| |||||||||||||||  |||||||||||||||    
T  40720005 tattcttccatggtcaaaagattaaattaataatgtttggacacacacacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttcc 40719906  T
Q  137 tctttattatt 147  Q
    || ||||||||    
T  40719905 tccttattatt 40719895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 35179155 - 35179268
Alignment:
Q  35 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatt 133  Q
    |||| ||||||| |||||||| |||||||||||||||||||||| | ||||| ||||||||||||| ||| ||||||||||| | |  ||||||||||||    
T  35179155 ggaggtattctttcatggtcataagaccaaatcaataatgtttggacacacatataaaaagattcttctcaaaatattcaataatttttttttatcaatt 35179254  T
Q  134 tcctctttattatt 147  Q
    ||||  ||||||||    
T  35179255 tccttcttattatt 35179268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 31333273 - 31333162
Alignment:
Q  37 agatattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcatttttatcaattt 134  Q
    |||||||||||||| |||||||||||||||||| ||||||||  ||||||||  |||||||||| | ||  ||||||||||||||| ||||||||| |||    
T  31333273 agatattcttccatagtcacaagaccaaatcaa-aatgtttggttacacacacataaaaagattttacttaaaatattcaatcatcttttttatcagttt 31333175  T
Q  135 cctctttattatt 147  Q
     ||| ||||||||    
T  31333174 tctccttattatt 31333162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 42921385 - 42921474
Alignment:
Q  58 agaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 147  Q
    ||||||||| ||||||||||||| ||| | ||||||||||||| ||| ||||| ||||||||| |||||||||||||| || ||||||||    
T  42921385 agaccaaattaataatgtttgaacacaaatataaaaagattcttctcaaaataatcaatcatcttttttatcaatttcatccttattatt 42921474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 38460929 - 38460884
Alignment:
Q  280 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcat 325  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  38460929 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcat 38460884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 5594922 - 5594962
Alignment:
Q  182 aaacactttttctttggtcctgtgaccatattaaaatttct 222  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  5594922 aaacactttttctttgatcctgtgaccatattaaaatttct 5594962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 38460427 - 38460469
Alignment:
Q  280 gaaacgtacataacatgtgacaattacaaacatccaatgaaat 322  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  38460427 gaaacgtacataacatgtggcacttacaaacatccaatgaaat 38460469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 30362082 - 30362018
Alignment:
Q  84 acacataaaaagattctcctctaaatattcaatcatca-tttttatcaatttcctctttattatt 147  Q
    ||||||||||| ||||||||| ||||||||||| || | |||||||||||||| || ||||||||    
T  30362082 acacataaaaaaattctcctcaaaatattcaattattattttttatcaatttcgtccttattatt 30362018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 36132676 - 36132776
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 139  Q
    |||||||| || |||||||||| |||| |||| | |||| ||||||||||||||||||  |  |  ||||||| ||||||  ||||||| ||||||||||    
T  36132676 tattcttctatagtcacaagactaaattaatagtatttggatacacacataaaaagatggtttttaaaatatttaatcattttttttattaatttcctct 36132775  T
Q  140 t 140  Q
    |    
T  36132776 t 36132776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 39401999 - 39401955
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    ||||||||||||||||||| || |||||| |||||||||||||||    
T  39401999 accaaacactttttctttgatcatgtgacgatattaaaatttctc 39401955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 40719865 - 40719821
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||||||||||||||| || |||||||||| ||||||||    
T  40719865 accaaacactttttctttggtcatgcgaccatattagaatttctc 40719821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 1162089 - 1162043
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 225  Q
    |||||||||||||||||| ||||| ||||||||| | ||||||||||    
T  1162089 accaaacactttttctttagtcctatgaccatataagaatttctcat 1162043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 34173559 - 34173603
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||||||| ||| ||| ||||||||| ||||||||||||    
T  34173559 accaaacactttttgtttagtcttgtgaccatgttaaaatttctc 34173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 34514581 - 34514625
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||| ||| ||||||| |||||| |||||||||||||||    
T  34514581 accaaacactatttgtttggtcttgtgactatattaaaatttctc 34514625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 35179296 - 35179341
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctcata 226  Q
    ||||||||||||||||||| |||  ||||||||||| |||||||||||    
T  35179296 accaaacactttttctttgatcc--tgaccatattagaatttctcata 35179341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 33758794 - 33758901
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 139  Q
    ||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |    
T  33758794 tattcttccatggtcacaagatcaaatcaatactgtttggacacacacataaaaagattctcctcaaactattcaatcatcttttttatcaatttccttt 33758893  T
Q  140 ttattatt 147  Q
    ||||||||    
T  33758894 ttattatt 33758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 23151518 - 23151436
Alignment:
Q  59 gaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctcttt 141  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  23151518 gaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcatttttatcaatttcttcttt 23151436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 2976556 - 2976446
Alignment:
Q  35 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 134  Q
    |||| |||||||||||||||| ||||||||||||||| |||||| |  |||||||||||||||  ||||  ||||||||||||||  |||||||||||||    
T  2976556 ggaggtattcttccatggtcataagaccaaatcaatagtgtttgga--cacacataaaaagatggtccttaaaatattcaatcattttttttatcaattt 2976459  T
Q  135 cctctttattatt 147  Q
    | |||||| ||||    
T  2976458 cttctttaatatt 2976446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 34849451 - 34849550
Alignment:
Q  49 atggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctctttattatt 147  Q
    ||||||| ||||| |||||||||||||||  | ||||| ||||||||||||||||| |||||||||||||||  ||||||||||||| ||| ||||||||    
T  34849451 atggtcataagacgaaatcaataatgtttcgacacacatataaaaagattctcctcaaaatattcaatcatctttttttatcaattttctccttattatt 34849550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 30319817 - 30319915
Alignment:
Q  50 tggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 147  Q
    ||||||||||||||||||||||||||||| |||  | |||||||||| |||||| |  ||||||||||||||| ||||||||||||||||| || |||||    
T  30319817 tggtcacaagaccaaatcaataatgtttggatacgcgcacataaaaa-attctctttaaaatattcaatcatcttttttatcaatttcctccttcttatt 30319915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 20524711 - 20524604
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 139  Q
    |||||||||||| |||||| || ||||||||| |||||| | |||||||| |||||||  |  |  ||||||||||||||  ||||||||||||||||||    
T  20524711 tattcttccatgatcacaaaactaaatcaatactgtttggacacacacatcaaaagatgatgtttaaaatattcaatcattttttttatcaatttcctct 20524612  T
Q  140 ttattatt 147  Q
    ||||||||    
T  20524611 ttattatt 20524604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 10719746 - 10719854
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctc 138  Q
    |||||||||||||||| |||||||||| |||| |||||| | ||||||||||||| ||  ||||  ||||||||||||| |  ||||||||||||| |||    
T  10719746 tattcttccatggtcataagaccaaattaatagtgtttggacacacacataaaaaaatggtccttaaaatattcaatcatttttttttatcaattttctc 10719845  T
Q  139 tttattatt 147  Q
    |||| ||||    
T  10719846 tttactatt 10719854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 37872291 - 37872201
Alignment:
Q  60 accaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctctttattatt 147  Q
    |||||||||||||| |||| | |||||||  ||||||||||||| || |||||||||||||||  ||||||||||||||||| ||||||||    
T  37872291 accaaatcaataatatttggacacacacacataaaaagattctcatcaaaatattcaatcatctttttttatcaatttcctccttattatt 37872201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 37872342 - 37872302
Alignment:
Q  37 agatattcttccatggtcacaagaccaaatcaataatgttt 77  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872342 agatattcttccatggtcacaagaccaaatcaataatgttt 37872302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 8026460 - 8026577
Alignment:
Q  33 aaggagatattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttt---ta 127  Q
    |||||| |||||||| || |||||||||||||||||||| |||||| |   | ||||||||||||||  || |  ||||||||||||||  ||||   ||    
T  8026460 aaggaggtattcttctatagtcacaagaccaaatcaatactgtttggacgcatacacataaaaagatggtctttaaaatattcaatcatttttttttata 8026559  T
Q  128 tcaatttcctctttatta 145  Q
    ||||||||||||||||||    
T  8026560 tcaatttcctctttatta 8026577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 3454259 - 3454358
Alignment:
Q  48 catggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 147  Q
    |||||| |||||| |||||||||||| |||    ||| | ||| ||||||||| ||  ||||||||||||||| |||||||||||||| | |||||||||    
T  3454259 catggttacaagatcaaatcaataatatttagtcacaaatatataaagattcttcttaaaatattcaatcatcttttttatcaatttcttttttattatt 3454358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 36442660 - 36442703
Alignment:
Q  181 caaacactttttctttggtcctgtgaccatattaaaatttctca 224  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  36442660 caaacactttttatttggtcatgtgaccatattaaaatttctca 36442703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 42285218 - 42285277
Alignment:
Q  89 taaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctctttattatt 147  Q
    |||||||||||||||| ||||||||||||| |  ||||||||||||||||| ||||||||    
T  42285218 taaaaagattctcctcaaaatattcaatcatttttttttatcaatttcctccttattatt 42285277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 13869240 - 13869281
Alignment:
Q  284 cgtacataacatgtgacaattacaaacatccaatgaaatcat 325  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  13869240 cgtacataacatgtggcacttacaaacatccaatgaaatcat 13869281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 13869874 - 13869829
Alignment:
Q  280 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcat 325  Q
    ||||||||||||||||||| || |||||||||| ||||||||||||    
T  13869874 gaaacgtacataacatgtggcacttacaaacattcaatgaaatcat 13869829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 27640875 - 27640916
Alignment:
Q  284 cgtacataacatgtgacaattacaaacatccaatgaaatcat 325  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  27640875 cgtacataacatgtggcacttacaaacatccaatgaaatcat 27640916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 10719883 - 10719927
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||    
T  10719883 accaaacactttttatttggtcatgtgaccataataaaatttctc 10719927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 3454387 - 3454434
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctcata 226  Q
    |||||| |||||||| ||| || |||||||||||||||||||||||||    
T  3454387 accaaatactttttccttgatcatgtgaccatattaaaatttctcata 3454434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 16778273 - 16778319
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 225  Q
    ||||| |||||||| |||||||||||| |||||||| ||||||||||    
T  16778273 accaagcactttttatttggtcctgtggccatattagaatttctcat 16778319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 21239045 - 21239003
Alignment:
Q  180 ccaaacactttttctttggtcctgtgaccatattaaaatttct 222  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||    
T  21239045 ccaaacactttttgtttggtcttgtgaccatattagaatttct 21239003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 20654502 - 20654461
Alignment:
Q  182 aaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||    
T  20654502 aaacactttttatttggtcatgtgaccatattagaatttctc 20654461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 27641478 - 27641433
Alignment:
Q  280 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcat 325  Q
    |||||||||||| |||||| || |||||||||| ||||||||||||    
T  27641478 gaaacgtacatatcatgtggcacttacaaacattcaatgaaatcat 27641433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 23145973 - 23145929
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||| |||||||||||| |||| ||||||||||| ||||||||    
T  23145973 accaaatactttttctttgatcctatgaccatattagaatttctc 23145929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 37872173 - 37872129
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||| ||||||||||||||||| ||| ||||||| ||||||||    
T  37872173 accaaatactttttctttggtcctctgatcatattagaatttctc 37872129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 3870024 - 3870135
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca----taaaaagattctcctctaaatattcaatcatcatttttatcaatttc 135  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||    |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  3870024 tattcttccatggtcacaagaccaaatcaataatgttttgacacacacagacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 3870123  T
Q  136 ctctttattatt 147  Q
    ||| ||||||||    
T  3870124 ctccttattatt 3870135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 11028779 - 11028887
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 138  Q
    ||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||    
T  11028779 tattcttccatcgtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctccttaaaatattcaatcatctttttttatcaatttcctc 11028878  T
Q  139 tttattatt 147  Q
     ||||||||    
T  11028879 cttattatt 11028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 36400857 - 36400952
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaatt 133  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  36400857 tattcttccatggtctcaagaccaaatcaataatgtttgaacacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 36400952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 28734183 - 28734070
Alignment:
Q  34 aggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 132  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||| |||||  |||||||||||    
T  28734183 aggaggtattcttccacggtcacaagaccaaatcaataatgtttggacacacacataaaaa-attctcctcaaaatactcactcatctttttttatcaat 28734085  T
Q  133 ttcctctttattatt 147  Q
    ||| |||||||||||    
T  28734084 ttcttctttattatt 28734070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 37721449 - 37721557
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctc 138  Q
    |||||||||||||||||||||||||||||||||| |||| | || | ||||||||||||||| || ||||||||||||| |  |||||||||||||||||    
T  37721449 tattcttccatggtcacaagaccaaatcaataatatttggacacgcgcataaaaagattctcttcaaaatattcaatcatttttttttatcaatttcctc 37721548  T
Q  139 tttattatt 147  Q
     ||||||||    
T  37721549 cttattatt 37721557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 38879517 - 38879625
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 138  Q
    ||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| |||||||  ||||||||||||| |||    
T  38879517 tattcttccatagtcacaagaccaaattaataatgtttggacacacacataaaaagattctcctcaaaatattaaatcatctttttttatcaattttctc 38879616  T
Q  139 tttattatt 147  Q
     | ||||||    
T  38879617 ctcattatt 38879625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 3647418 - 3647526
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 137  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||| |  ||||||||||||||| ||||||||||||| ||    
T  3647418 tattcttccttggtcacaagaccaaatcaataatgtttgaacacgaacacataaaaa-attctctttaaaatattcaatcatcttttttatcaattttct 3647516  T
Q  138 ctttattatt 147  Q
    | || |||||    
T  3647517 ccttcttatt 3647526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 3870164 - 3870208
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  3870164 accaaacactttttctttggtcctgtgaccatattagaatttctc 3870208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 30706258 - 30706149
Alignment:
Q  41 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-----tcatttttatcaatttc 135  Q
    |||||| |||||||||||||||||||||||| ||||||   ||||||||||||||||  ||||  |||||||||||||     |  ||||||||||||||    
T  30706258 attcttacatggtcacaagaccaaatcaatagtgtttg--gacacacataaaaagatggtccttaaaatattcaatcatttttttttttttatcaatttc 30706161  T
Q  136 ctctttattatt 147  Q
    ||||||| ||||    
T  30706160 ctctttactatt 30706149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 34480099 - 34480055
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  34480099 accaaacactttttctttggtcctgtgaccatattagaatttctc 34480055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 6512191 - 6512079
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttg--aatacacacataaaaagattctcctct-aaatattcaatca---tcatttttatcaatt 133  Q
    |||| ||||||||||||||||||||||||||| ||||||   | ||||||||||||||| |   |||| |||||||||||||   |  ||||||||||||    
T  6512191 tattattccatggtcacaagaccaaatcaatagtgtttggacacacacacataaaaaga-tgaactctaaaatattcaatcatttttttttttatcaatt 6512093  T
Q  134 tcctctttattatt 147  Q
    ||||||||||||||    
T  6512092 tcctctttattatt 6512079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 36400993 - 36401036
Alignment:
Q  180 ccaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  36400993 ccaaacactttttctttagtcctgtgaccatattagaatttctc 36401036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 3949378 - 3949317
Alignment:
Q  86 acataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 147  Q
    |||||||||  |||||||| ||||||||||||||  |||||||||||||| | |||||||||    
T  3949378 acataaaaaatttctcctcaaaatattcaatcattttttttatcaatttcttttttattatt 3949317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 30706122 - 30706078
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||||||| |||| || ||||||||||||||||||||||    
T  30706122 accaaacactttttatttgatcatgtgaccatattaaaatttctc 30706078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 37721585 - 37721630
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctca 224  Q
    |||||||||||||||||| |||  |||||||||||| |||||||||    
T  37721585 accaaacactttttctttagtctcgtgaccatattagaatttctca 37721630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 9009119 - 9009163
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||| ||| ||||||| ||||||||||||| ||||||||    
T  9009119 accaaacactatttgtttggtcttgtgaccatattagaatttctc 9009163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 35362 - 35464
Alignment:
Q  36 gagatattcttccatggtcacaagaccaaatcaataatgtttga--atacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 132  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  35362 gagatattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 35461  T
Q  133 ttc 135  Q
    |||    
T  35462 ttc 35464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 35503 - 35547
Alignment:
Q  179 accaaacactttttctttggtcctgtgaccatattaaaatttctc 223  Q
    ||||||||||||||||||| || |||||| |||||||||||||||    
T  35503 accaaacactttttctttgatcatgtgacgatattaaaatttctc 35547  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 2141348 - 2141240
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 138  Q
    ||||||||||||||||||||| || |||||||| ||||| | || |||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||    
T  2141348 tattcttccatggtcacaagatcatatcaataacgtttggacacccacataaaaagatttttctcaaaatattcaatcatctatttttatcaatttcctc 2141249  T
Q  139 tttattatt 147  Q
     ||||||||    
T  2141248 attattatt 2141240  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 7080148 - 7080262
Alignment:
Q  35 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaat 132  Q
    |||| |||||||| ||||||||| |||||||||||||||||||| | ||||  |||||||||||||||| || ||||||||||| ||| |||||||||||    
T  7080148 ggaggtattcttctatggtcacatgaccaaatcaataatgtttggacacacacacataaaaagattctcttcaaaatattcaataatcttttttatcaat 7080247  T
Q  133 ttcctctttattatt 147  Q
    ||| |||||| ||||    
T  7080248 ttcgtctttaatatt 7080262  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 25337023 - 25336928
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 134  Q
    ||||||||| ||||||||||| ||||||||||||||||| | |  |||||||||||| |||||| |  ||||||||||||||| |||||||||||||    
T  25337023 tattcttccttggtcacaagatcaaatcaataatgtttggacacgcacacataaaaa-attctctttaaaatattcaatcatcttttttatcaattt 25336928  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 17852690 - 17852650
Alignment:
Q  181 caaacactttttctttggtcctgtgaccatattaaaatttc 221  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  17852690 caaacactttttctttcgttctgtgaccatattaaaatttc 17852650  T

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Target: scaffold0288 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 18163 - 18084
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 119  Q
    |||||||||||||| |||||| | ||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  18163 tattcttccatggttacaagatccaatcaataatgtttgaacacacatagaaaaagattctcctcaaaatattcaatcat 18084  T

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Target: scaffold0288; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 18022 - 17977
Alignment:
Q  179 accaaacacttttt-ctttggtcctgtgaccatattaaaatttctc 223  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||||    
T  18022 accaaacacttttttctttggtcccgtgaccatattagaatttctc 17977  T

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Target: scaffold0009 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 25680 - 25767
Alignment:
Q  32 taaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 119  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||| | |||||| |||||||||| || || ||||||||||||||    
T  25680 taaggaggtattcttccatgatcacgagaccaaatcaataatgtttggacacacacgtaaaaagattttcatcaaaatattcaatcat 25767  T

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Target: scaffold1339 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 165 - 57
Alignment:
Q  40 tattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 137  Q
    |||||||||||| ||||||||||||||||||| |||||| | ||||  ||||||||||||  || |  ||||||||||||||  |||||||||||||| |    
T  165 tattcttccatgatcacaagaccaaatcaatagtgtttggacacacatacataaaaagatagtcttaaaaatattcaatcat-ttttttatcaatttcat 67  T
Q  138 ctttattatt 147  Q
    ||||||||||    
T  66 ctttattatt 57  T

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Target: scaffold0386 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 691 - 737
Alignment:
Q  279 ggaaacgtacataacatgtgacaattacaaacatccaatgaaatcat 325  Q
    |||||||||||||||||||| || |||||||||||||||||||||||    
T  691 ggaaacgtacataacatgtggcacttacaaacatccaatgaaatcat 737  T

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Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 1333 - 1288
Alignment:
Q  280 gaaacgtacataacatgtgacaattacaaacatccaatgaaatcat 325  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||    
T  1333 gaaacgtacataacatgtgacacttacaaacatccaataaaatcat 1288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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