View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7384_low_7 (Length: 288)
Name: NF7384_low_7
Description: NF7384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7384_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 31876615 - 31876354
Alignment:
| Q |
9 |
gaagaatatgaaaatcaacatgggaattccaatagttacactcctccttcttctacttgtttctataatctccccatcccagaattatcatttcataatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31876615 |
gaagaatatgaaaatcaacatgggaattccaatagttacactcctccttcttctacttgtttctataatctccccatcccagaattatcatttcataatc |
31876516 |
T |
|
| Q |
109 |
tcattgcttctactgttttaccccttacaaaacagtttgtgtcacctaacgggtaggccatcaatgccatttatgtatcctcatatttcttcctcaacat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31876515 |
tcattgcttctactgttttaccccttacaaaacagtttgtgtcacctaacgggtaggccatcaatgccatttatgtatcctcatatttcttcctcaacat |
31876416 |
T |
|
| Q |
209 |
tttcattccaaaacttatgactaactcannnnnnnatgatcccctcaaaattagcattgtag |
270 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31876415 |
tttcattccaaaacttatgactaactcatttttttatgatcccctcaaaattagcattgtag |
31876354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 885824 - 885876
Alignment:
| Q |
34 |
attccaatagttacactcctccttcttctacttgtttctataatctccccatc |
86 |
Q |
| |
|
|||||| ||| ||||||||||||| | |||||| |||||||||| |||||||| |
|
|
| T |
885824 |
attccactagctacactcctccttttgctacttatttctataatttccccatc |
885876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 31936526 - 31936490
Alignment:
| Q |
14 |
atatgaaaatcaacatgggaattccaatagttacact |
50 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
31936526 |
atatgaaaatcaatatgggaattccactagttacact |
31936490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 31899335 - 31899388
Alignment:
| Q |
33 |
aattccaatagttacactcctccttcttctacttgtttctataatctccccatc |
86 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
31899335 |
aattccactagctacactcctccttctgctactcatttctataatttccccatc |
31899388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University