View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7384_low_9 (Length: 249)

Name: NF7384_low_9
Description: NF7384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7384_low_9
NF7384_low_9
[»] chr6 (4 HSPs)
chr6 (83-249)||(35220134-35220300)
chr6 (152-244)||(7072570-7072662)
chr6 (159-245)||(24177703-24177789)
chr6 (153-244)||(4084519-4084610)
[»] chr8 (4 HSPs)
chr8 (95-249)||(4424578-4424732)
chr8 (153-247)||(10543961-10544055)
chr8 (159-245)||(13523129-13523215)
chr8 (159-245)||(13612664-13612750)
[»] chr3 (6 HSPs)
chr3 (83-249)||(5561606-5561771)
chr3 (95-247)||(44328385-44328537)
chr3 (95-244)||(17058732-17058881)
chr3 (159-245)||(13503313-13503399)
chr3 (173-245)||(634883-634955)
chr3 (203-244)||(27024097-27024138)
[»] chr2 (10 HSPs)
chr2 (83-249)||(29992077-29992242)
chr2 (159-245)||(22849517-22849603)
chr2 (204-247)||(10944221-10944264)
chr2 (204-247)||(10950090-10950133)
chr2 (152-247)||(26370458-26370553)
chr2 (204-247)||(27635140-27635183)
chr2 (190-244)||(33845701-33845755)
chr2 (152-245)||(3981759-3981852)
chr2 (114-170)||(19276167-19276223)
chr2 (153-245)||(19933906-19933998)
[»] chr4 (4 HSPs)
chr4 (83-249)||(13501545-13501711)
chr4 (158-247)||(32663690-32663779)
chr4 (152-247)||(17777865-17777960)
chr4 (159-245)||(54781845-54781931)
[»] chr7 (2 HSPs)
chr7 (95-249)||(28544166-28544320)
chr7 (159-245)||(21505008-21505094)
[»] chr5 (3 HSPs)
chr5 (95-249)||(25585863-25586017)
chr5 (159-244)||(21708479-21708564)
chr5 (157-245)||(593738-593826)
[»] chr1 (6 HSPs)
chr1 (152-246)||(20491501-20491595)
chr1 (209-244)||(5714735-5714770)
chr1 (158-237)||(20426011-20426090)
chr1 (153-244)||(22069835-22069926)
chr1 (157-245)||(23264342-23264430)
chr1 (157-245)||(33906653-33906741)
[»] scaffold0006 (1 HSPs)
scaffold0006 (190-245)||(203195-203250)
[»] scaffold0044 (1 HSPs)
scaffold0044 (190-244)||(11026-11080)
[»] scaffold0068 (1 HSPs)
scaffold0068 (159-244)||(5346-5431)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 35220134 - 35220300
Alignment:
Q  83 aaagaagatatgttatatcatttcactagtcaaaatgtgttcaatacaattaagtggctccactaggagctggaaactagctgacaatacggccaccttt 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35220134 aaagaagatatgttatatcatttcactagtcaaaatgtgttcaatacaatcaagtggctccactaggagctggaaactagctgacaatacggccaccttt 35220233  T
Q  183 gctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataatact 249  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35220234 gctaacttatgggcaatctcgtttgcttgtctccgtacaaactcaacactagagttttcataatact 35220300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 7072570 - 7072662
Alignment:
Q  152 ctggaaactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcata 244  Q
    ||||||| |||||||||||  || | |||||||||||  ||| |||| ||| |||| ||||||||| ||||||||||||||||||||||||||    
T  7072570 ctggaaattagctgacaatgtggtcgcctttgctaactcatgagcaacctcatttgattgtctctgcacaaactcaacactagagttttcata 7072662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 24177789 - 24177703
Alignment:
Q  159 ctagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    ||||||||  ||| |||| |||| |||||  ||||||||| ||| |||||||| ||| ||||||||||||||| |||||||||||||    
T  24177789 ctagctgaagataaggccgccttagctaaactatgggcaacctcatttgcttgcctccgtacaaactcaacacaagagttttcataa 24177703  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 4084610 - 4084519
Alignment:
Q  153 tggaaactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcata 244  Q
    |||||||||||||| || | |||| | ||||||||  |||| |||| |||||||||||||||| | |||||||| ||||  |||||||||||    
T  4084610 tggaaactagctgataacaaggccgcttttgctaaattatgagcaacctcgtttgcttgtctccgcacaaactcgacacgtgagttttcata 4084519  T

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Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 4424578 - 4424732
Alignment:
Q  95 ttatatcatttcactagtcaaaatgtgttcaatacaattaagtggctccactaggagctggaaactagctgacaatacggccacctttgctaacatatgg 194  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  4424578 ttatatcatttcactagtcaaaatgtgttcaatacaatcaagtggctccactaggagctggaaactagctgacaatagggccacctttgctaacttatgg 4424677  T
Q  195 gcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataatact 249  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||    
T  4424678 gcaacctcatttgcttgtctccgtacaaactcaacactagagtttttataatact 4424732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 10544055 - 10543961
Alignment:
Q  153 tggaaactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataata 247  Q
    |||| ||||| |||||||| || | |||| |||||  ||||  ||| ||| |||||||||||| |||||||||||||| | ||||||||||||||    
T  10544055 tggagactagttgacaataaggtcgccttagctaatttatgaacaacctcatttgcttgtctccgtacaaactcaacagtcgagttttcataata 10543961  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 13523129 - 13523215
Alignment:
Q  159 ctagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    ||||||||  ||| |||| |||| |||||  |||||||||  || |||||||| ||| ||||||||||||||| ||||||| |||||    
T  13523129 ctagctgaagataaggccgccttagctaaactatgggcaacatcatttgcttgcctccgtacaaactcaacacaagagtttacataa 13523215  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 13612664 - 13612750
Alignment:
Q  159 ctagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    ||||||||  ||| |||| |||| |||||  |||||||||  || |||||||| ||| ||||||||||||||| ||||||| |||||    
T  13612664 ctagctgaagataaggccgccttagctaaactatgggcaacttcatttgcttgcctccgtacaaactcaacacaagagtttccataa 13612750  T

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Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 5561606 - 5561771
Alignment:
Q  83 aaagaagatatgttatatcatttcactagtcaaaatgtgttcaatacaattaagtggctccactaggagctggaaactagctgacaatacggccaccttt 182  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||| |||| |||||    
T  5561606 aaagaagagatcttatatcatttcactagtcaaaatgtgttcaatacaatcaagtgg-tcaactaggagctggaaactagctgacaatagggccgccttt 5561704  T
Q  183 gctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataatact 249  Q
    |||||| ||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||||||||    
T  5561705 gctaacttatgggcaacctcatttgcttgtctccgtacaaactcaacactagaattttcataatact 5561771  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 44328537 - 44328385
Alignment:
Q  95 ttatatcatttcactagtcaaaatgtgttcaatacaattaagtggctccactaggagctggaaactagctgacaatacggccacctttgctaacatatgg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  44328537 ttatatcatttcactagtcaaaatgtgttcaatacaattaagtggctcaattaggagctggaaactagctgacaatagagccgcctttgctaacttatgg 44328438  T
Q  195 gcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataata 247  Q
     ||| ||| |||||||||||  ||| |||||||||||||||||||||||||||    
T  44328437 acaacctcatttgcttgtcttcgtaaaaactcaacactagagttttcataata 44328385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 17058732 - 17058881
Alignment:
Q  95 ttatatcatttcactagtcaaaatgtgttcaatacaattaagtggctccactaggagctggaaactagctgacaatacggccacctttgctaacatatgg 194  Q
    ||||| ||||||| || | ||||||||||||||||||||  |||||   || |  |  ||||||||||||||||||  || | |||||||||||  |||     
T  17058732 ttatagcatttcattacttaaaatgtgttcaatacaatttggtggcatgaccaaaatttggaaactagctgacaatgtggtcgcctttgctaactcatga 17058831  T
Q  195 gcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcata 244  Q
    |||| ||| |||||||||||| | ||||||||||||||||||||||||||    
T  17058832 gcaacctcatttgcttgtctccgcacaaactcaacactagagttttcata 17058881  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 13503399 - 13503313
Alignment:
Q  159 ctagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    ||||||||  ||| |||| |||| |||||  ||||||||| ||| |||||||| ||| ||||||||||||||| |||||||||||||    
T  13503399 ctagctgaagataaggccgccttagctaaactatgggcaacctcatttgcttgcctccgtacaaactcaacacaagagttttcataa 13503313  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 634955 - 634883
Alignment:
Q  173 ggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    |||| ||||||||||   |||||||| ||| |||||||||||| | |||||||| ||||| ||||||||||||    
T  634955 ggccgcctttgctaattcatgggcaacctcatttgcttgtctccgaacaaactctacactcgagttttcataa 634883  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 27024097 - 27024138
Alignment:
Q  203 gtttgcttgtctctgtacaaactcaacactagagttttcata 244  Q
    ||||||||||||| | |||||||||||||| |||||||||||    
T  27024097 gtttgcttgtctccgcacaaactcaacacttgagttttcata 27024138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 29992242 - 29992077
Alignment:
Q  83 aaagaagatatgttatatcatttcactagtcaaaatgtgttcaatacaattaagtggctccactaggagctggaaactagctgacaatacggccaccttt 182  Q
    |||||||| || ||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  29992242 aaagaagagatcttatatc-tttcactagtcaaaatatgttcaatacaatcaagtggctcaactaggagctggaaactagctgacaatagggccaccttt 29992144  T
Q  183 gctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataatact 249  Q
    |||||| ||||||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  29992143 gctaacttatgggcaacctcatttgcttgtctccgtacaaactcaacacaagagttttcataatact 29992077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 22849603 - 22849517
Alignment:
Q  159 ctagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    ||||||||  ||| |||| |||| |||||  ||||||||| ||| |||||||| ||| ||||||||||||||| |||||||||||||    
T  22849603 ctagctgaagataaggccgccttagctaaactatgggcaacctcatttgcttgcctccgtacaaactcaacacaagagttttcataa 22849517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 10944264 - 10944221
Alignment:
Q  204 tttgcttgtctctgtacaaactcaacactagagttttcataata 247  Q
    ||||||||||||||||||||||||||  | ||||||||||||||    
T  10944264 tttgcttgtctctgtacaaactcaaccgtcgagttttcataata 10944221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 10950133 - 10950090
Alignment:
Q  204 tttgcttgtctctgtacaaactcaacactagagttttcataata 247  Q
    ||||||||||||||||||||||||||  | ||||||||||||||    
T  10950133 tttgcttgtctctgtacaaactcaaccgtcgagttttcataata 10950090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 26370553 - 26370458
Alignment:
Q  152 ctggaaactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataata 247  Q
    ||||| ||||| |||||||| |||  |||| |||||  |||| |||| ||| |||||||| ||| | |||||||||||| | ||||||||||||||    
T  26370553 ctggagactagttgacaataaggctgccttagctaatttatgagcaacctcatttgcttgcctccgcacaaactcaacagtcgagttttcataata 26370458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 27635183 - 27635140
Alignment:
Q  204 tttgcttgtctctgtacaaactcaacactagagttttcataata 247  Q
    |||||||||||| |||||||||||||| | ||||||||||||||    
T  27635183 tttgcttgtctccgtacaaactcaacagtcgagttttcataata 27635140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 33845701 - 33845755
Alignment:
Q  190 tatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcata 244  Q
    |||| |||| ||| |||||||| ||| ||||||||||||||| ||||||||||||    
T  33845701 tatgagcaacctcatttgcttgcctccgtacaaactcaacacgagagttttcata 33845755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 245
Target Start/End: Original strand, 3981759 - 3981852
Alignment:
Q  152 ctggaaactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    |||||||||||||||  ||  |||| |||| |||||   |||||||| ||| || ||||||||| | | |||||| ||||||||||||||||||    
T  3981759 ctggaaactagctgatgatgaggccgccttagctaattcatgggcaacctcattcgcttgtctccgaataaactccacactagagttttcataa 3981852  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 19276167 - 19276223
Alignment:
Q  114 aaaatgtgttcaatacaattaagtggctccactaggagctggaaactagctgacaat 170  Q
    |||||||||||||||||| | |||||||| || | || ||| |||||||||||||||    
T  19276167 aaaatgtgttcaatacaacttagtggctcgaccaagatctgaaaactagctgacaat 19276223  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 19933906 - 19933998
Alignment:
Q  153 tggaaactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    ||||||||||| || |||  |||  ||||||||||   |||||||  ||| |||||||||||| | |||||||| ||||| ||||||||||||    
T  19933906 tggaaactagccgataatgtggcagcctttgctaattcatgggcagcctcatttgcttgtctccgaacaaactctacactcgagttttcataa 19933998  T

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Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 13501711 - 13501545
Alignment:
Q  83 aaagaagatatgttatatcatttcactagtcaaaatgtgttcaatacaattaagtggctccactaggagctggaaactagctgacaatacggccaccttt 182  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| || | |||||    
T  13501711 aaagaagagatcttatatcatttcactagtcaaaatgtgttcaatacaatcaagtggctcaactaggagctggaaacaagctgacaatagggtcgccttt 13501612  T
Q  183 gctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataatact 249  Q
    |||||| ||||| ||| ||| |||||||||||| ||||||||||||||||||| |||||||||||||    
T  13501611 gctaacttatggacaacctcatttgcttgtctccgtacaaactcaacactagaattttcataatact 13501545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 32663779 - 32663690
Alignment:
Q  158 actagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataata 247  Q
    ||||| |||||||| ||||  ||| |||||  |||| |||||||| |||||||||||| |||||||||||||| | ||||||||||||||    
T  32663779 actagttgacaataaggccgtcttagctaatttatgagcaatctcatttgcttgtctccgtacaaactcaacagtcgagttttcataata 32663690  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 17777865 - 17777960
Alignment:
Q  152 ctggaaactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataata 247  Q
    ||||| ||||| |||||||| |||| |||| |||||  |||| |||||||  |||||||||||| |||||||||| ||| | ||||||||||||||    
T  17777865 ctggagactagttgacaataaggccgccttagctaatttatgagcaatcttatttgcttgtctccgtacaaactctacagtcgagttttcataata 17777960  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 54781931 - 54781845
Alignment:
Q  159 ctagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    ||||||||  ||| ||||||||| |||||  ||||| ||| ||| |||||||| ||| |||||||||||||||  ||||||||||||    
T  54781931 ctagctgaagataaggccaccttagctaaactatggacaacctcatttgcttgcctccgtacaaactcaacacatgagttttcataa 54781845  T

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Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 28544320 - 28544166
Alignment:
Q  95 ttatatcatttcactagtcaaaatgtgttcaatacaattaagtggctccactaggagctggaaactagctgacaatacggccacctttgctaacatatgg 194  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| ||| |||||||||||| ||||     
T  28544320 ttatatcatttcactagtcaaaatgtgttcaatacaatcaagtggctcaattaggagctggaaactagctgacaatagggctacctttgctaacttatga 28544221  T
Q  195 gcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataatact 249  Q
    |||| ||| |||||||||||  ||||||||||||||||||||||| |||||||||    
T  28544220 gcaacctcatttgcttgtcttcgtacaaactcaacactagagtttacataatact 28544166  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 21505094 - 21505008
Alignment:
Q  159 ctagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    ||||||||  ||| |||| |||| |||||  ||||||||| ||| |||||||| ||| ||||||||||||||| |||||||||||||    
T  21505094 ctagctgaagataaggccgccttagctaaactatgggcaacctcatttgcttgcctccgtacaaactcaacacaagagttttcataa 21505008  T

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Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 25585863 - 25586017
Alignment:
Q  95 ttatatcatttcactagtcaaaatgtgttcaatacaattaagtggctccactaggagctggaaactagctgacaatacggccacctttgctaacatatgg 194  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |||| |||| ||||||||||| |||||    
T  25585863 ttatatcatttcactagtcaaaatgtgttcaatacaatcaagtggctcaactaagagctggaaactagctgataatagggccgcctttgctaacttatgg 25585962  T
Q  195 gcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataatact 249  Q
     ||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  25585963 acaacctcatttgcttgtctccgtacaaactcaacaccagagttttcataatact 25586017  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 21708564 - 21708479
Alignment:
Q  159 ctagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcata 244  Q
    |||||||| |||| |||||| || |||||  |||| |||| ||| |||||||| |||  |||||||||||||  ||||||||||||    
T  21708564 ctagctgataataaggccactttagctaaactatgagcaacctcatttgcttgcctccatacaaactcaacatgagagttttcata 21708479  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 593826 - 593738
Alignment:
Q  157 aactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    |||||||||| || | |||| | ||||||||  |||| |||| |||||||||||||||| | |||||||| ||||  |||||| |||||    
T  593826 aactagctgataacaaggccgcttttgctaagttatgagcaacctcgtttgcttgtctccgcacaaactcgacacgtgagtttacataa 593738  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 20491595 - 20491501
Alignment:
Q  152 ctggaaactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataat 246  Q
    ||||| ||||| |||||||| |||| |||| |||||  |||| |||| ||| |||||||||||| |||||||||||||| | || ||||||||||    
T  20491595 ctggagactagttgacaataaggccgccttagctaatttatgagcaacctcatttgcttgtctccgtacaaactcaacagtcgacttttcataat 20491501  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 5714770 - 5714735
Alignment:
Q  209 ttgtctctgtacaaactcaacactagagttttcata 244  Q
    ||||||||||||||||||||||||| ||||||||||    
T  5714770 ttgtctctgtacaaactcaacactatagttttcata 5714735  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 20426090 - 20426011
Alignment:
Q  158 actagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagt 237  Q
    |||||||||||| | |||| |||| |||||  |||| || | |||||||||||||||| | |||||||||||||| ||||    
T  20426090 actagctgacaacaaggccgccttagctaaattatgagcgacctcgtttgcttgtctccgcacaaactcaacacttgagt 20426011  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 22069926 - 22069835
Alignment:
Q  153 tggaaactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcata 244  Q
    ||||||||||||||||||  |||| |||||| ||||  ||| |||| ||| || | ||||||| | |||||||||| |||| ||||||||||    
T  22069926 tggaaactagctgacaatgtggccgcctttgttaactcatgagcaacctcattcgtttgtctccgcacaaactcaatactacagttttcata 22069835  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 23264342 - 23264430
Alignment:
Q  157 aactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    |||||||||| || | |||| | ||||||||  |||| |||| |||||||||||||||| | |||||||| ||||  |||||| |||||    
T  23264342 aactagctgataacatggccgcttttgctaagttatgagcaacctcgtttgcttgtctccgcacaaactcgacacgtgagtttacataa 23264430  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 33906653 - 33906741
Alignment:
Q  157 aactagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    |||||||||| || | |||| | ||||||||  |||| |||| |||||||||||||||| | |||||||| ||||  |||||| |||||    
T  33906653 aactagctgataacaaggccgcttttgctaagttatgagcaacctcgtttgcttgtctccgcacaaactcgacacgtgagtttacataa 33906741  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 203195 - 203250
Alignment:
Q  190 tatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcataa 245  Q
    ||||||||| ||| |||||||| ||| ||||||||||||||| |||||||||||||    
T  203195 tatgggcaacctcatttgcttgcctccgtacaaactcaacacaagagttttcataa 203250  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 11080 - 11026
Alignment:
Q  190 tatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcata 244  Q
    |||| |||| ||| |||||||| ||| ||||||||||||||| ||||||||||||    
T  11080 tatgagcaacctcatttgcttgcctccgtacaaactcaacacgagagttttcata 11026  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 5346 - 5431
Alignment:
Q  159 ctagctgacaatacggccacctttgctaacatatgggcaatctcgtttgcttgtctctgtacaaactcaacactagagttttcata 244  Q
    |||||||| |||| |||||| || |||||  |||| |||| ||| |||||||| |||  |||||||||||||  ||||||||||||    
T  5346 ctagctgataataaggccactttagctaaactatgagcaacctcatttgcttgcctccatacaaactcaacatgagagttttcata 5431  T

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