View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7385_low_3 (Length: 449)

Name: NF7385_low_3
Description: NF7385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7385_low_3
NF7385_low_3
[»] chr6 (2 HSPs)
chr6 (203-340)||(32053259-32053396)
chr6 (150-212)||(32052613-32052675)
[»] chr2 (1 HSPs)
chr2 (27-112)||(42596979-42597064)
[»] chr8 (1 HSPs)
chr8 (17-110)||(38789849-38789942)
[»] chr1 (1 HSPs)
chr1 (36-109)||(49140606-49140679)
[»] chr7 (1 HSPs)
chr7 (29-104)||(25532482-25532553)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 203 - 340
Target Start/End: Original strand, 32053259 - 32053396
Alignment:
Q  203 aattacatatgtaaacctgaataattataaagaatgtttagtttaacaatttcgatgttatcaattgaattagatgttatcgatatttataatcgaactc 302  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32053259 aattacatatgtaaacctgaataactataaagaatgtttagtctaacaatctcgatgttatcaattgaattagatgttaccgatatttataatcgaactc 32053358  T
Q  303 tagtcctagttattcttatttttacgggaggttttacc 340  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32053359 tagtcctagttattcttatttttacgggaggttttacc 32053396  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 32052613 - 32052675
Alignment:
Q  150 aattgaggaagtcctaaataccatttgaaaactcgtcataaatacaaaggataaattacatat 212  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32052613 aattgagggagtcctaagtaccatttgaaaactcgtcataaatacaaaggataaattacatat 32052675  T

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Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 42597064 - 42596979
Alignment:
Q  27 gaagaaaggaatgaatatgtgtttcaaaattgagaagattaatgtaatggtagaagaaatgaatcaggaagaagtgaatctatgaa 112  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42597064 gaagaaagaaatgaatatgtgtttcaaatttgagaagattaatgtaatggtagaagaaatgaattaggaagaagtgaatctatgaa 42596979  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 38789849 - 38789942
Alignment:
Q  17 ataaacagtggaagaaaggaatgaatatgtgtttcaaaattgagaagattaatgtaatggtagaagaaatgaatcaggaagaagtgaatctatg 110  Q
    |||||| ||||||||||| ||||||||| ||| ||||| | |||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  38789849 ataaactgtggaagaaagaaatgaatatatgtctcaaattggagaagattaatttaatggtagaagaaatgaatcacgaagaagtgaatctatg 38789942  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 49140679 - 49140606
Alignment:
Q  36 aatgaatatgtgtttcaaaattgagaagattaatgtaatggtagaagaaatgaatcaggaagaagtgaatctat 109  Q
    ||||||| ||||||| ||| |||||||||||||||||||||  |||||||||||  ||||||||||||||||||    
T  49140679 aatgaatttgtgttttaaatttgagaagattaatgtaatggaggaagaaatgaactaggaagaagtgaatctat 49140606  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 25532553 - 25532482
Alignment:
Q  29 agaaaggaatgaatatgtgtttcaaaattgagaagattaatgtaatggtagaagaaatgaatcaggaagaagtgaa 104  Q
    |||||| ||||||| |||||||||    ||||||||||||||||||||  ||| |||||||  |||||||||||||    
T  25532553 agaaagaaatgaatttgtgtttca----tgagaagattaatgtaatggaggaataaatgaactaggaagaagtgaa 25532482  T

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