View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7385_low_5 (Length: 269)
Name: NF7385_low_5
Description: NF7385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7385_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 42179640 - 42179386
Alignment:
| Q |
18 |
ctatgtagataccaaattagggaataga-cttattgaaatgataaa-tcaagagtataaa-gcacaatattttcagtatcatttcctcttccttgattcc |
114 |
Q |
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| T |
42179640 |
ctatgtagataccaaattagggaataaaacttattgaaatgataaaatcaagagtataaaagcacaatattttcagtatcatttcctcttccttgattcc |
42179541 |
T |
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| Q |
115 |
aattttatcatttaattcagagaagacgaacctatgattgataactatgctttt---ccccccatagactgtct---ttgactgcatcatcaac-ttttt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
42179540 |
aattttatcatttaattcagagaagacgaacctatgattgataactatgtttttcccccccccatagactgtctttgttgactgcatcatcaactttttt |
42179441 |
T |
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| Q |
208 |
gttgaatctacttgttaaatgtcttagactataagagacgacaagataacacgaa |
262 |
Q |
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| T |
42179440 |
gttgaatctacttgttaaatgtcctagactataagagacgacaagataacacgaa |
42179386 |
T |
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