View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7385_low_6 (Length: 257)
Name: NF7385_low_6
Description: NF7385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7385_low_6 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 78317 - 78544
Alignment:
| Q |
10 |
aataatatggtgagaattttaaaagtgaactgaaataaatattttgaaagagttttacataatgcatctagtcctcttaggtatagcatgatgagttttc |
109 |
Q |
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| T |
78317 |
aataatatggtgagaattttaaaagtgaactgaaataaatattttgaaagagttttacataatggatctagtcctcttaggtatagcatgatgagttttg |
78416 |
T |
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| Q |
110 |
actagttttctatacctgttcaatatttggataaaatatagtgtatagaatgaaaacaaaaggaatttcagccgtaaccaaacaaaacggcataacaaca |
209 |
Q |
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| T |
78417 |
actag-tttctatacctgtttaatatttggataaaatatagtgtatagaatgaaaacaaaaggaatttcagcc-taaccaaacaaaacggcataacaaca |
78514 |
T |
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| Q |
210 |
gagaactaattcaagcacggacaatcataa |
239 |
Q |
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| T |
78515 |
gtgaactaattcaagcacggacaatcataa |
78544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 29484220 - 29483988
Alignment:
| Q |
10 |
aataatatggtgagaattttaaaagt----gaactgaaataaatattttgaaagagttttacataatgcatctagtcctcttaggtatagcatgatgagt |
105 |
Q |
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||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29484220 |
aataatatgctgagcattttaaaagtaagtgaactgaaataaatattttgaaagagttttacataatgcatctagtcctcttaggtatagcatgatgagt |
29484121 |
T |
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| Q |
106 |
tttcactagttttctatacctgttcaatatttggataaaatatagtgtatagaatgaaaacaaaaggaatttcagccgtaaccaaacaaaacggcataac |
205 |
Q |
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| T |
29484120 |
tttcactagttt-ctatacctgttcaatatttggataaaatatagtgtatagaatgaaaacaaaaggaatttcagccgtaaccaaacaaaacggcataac |
29484022 |
T |
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| Q |
206 |
aacagagaactaattcaagcacggacaatcataa |
239 |
Q |
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| T |
29484021 |
aacagtgaactaattcaagcacggacaatcataa |
29483988 |
T |
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