View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7386_high_3 (Length: 421)
Name: NF7386_high_3
Description: NF7386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7386_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 32739243 - 32739635
Alignment:
| Q |
17 |
acatcacttacactctaatataagtgacccaagaaagggtagttgtccaactagtgtttaaaattaaattgatcaatctattttatttattttttgacaa |
116 |
Q |
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| T |
32739243 |
acattacttacactctaatataagtgacccaagaaagggtagttgtccaactagtgtttaaaattaaattgatcaatccattttatttattttttgacaa |
32739342 |
T |
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| Q |
117 |
tattcaaacatgtaaaataatgtatataagtcattattttgaccaaaacctttatcatgtgtctatgttacaatattagtacttgctcaaagcaattgcc |
216 |
Q |
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| T |
32739343 |
tattcaaacatgtaaaataatctatataagtcattattttgaccaaaacctttatcatgtgtctgtgttacaatattagtacttgctcaaagcaattgcc |
32739442 |
T |
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| Q |
217 |
ggaatgatgaatatattgtttgagttagttattttgggtctgttatcaattttaatttctccatgttaaagaaccttgtaggagtcatagggta------ |
310 |
Q |
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| T |
32739443 |
ggaatgatgaatatattgtttgagttagttattttgggtctcttatcagttttaatttctccatgttaaagaaccttgtaggagtcatagggtataatag |
32739542 |
T |
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| Q |
311 |
-agtgtatatcagggaagcaaggccaacagaaaaagtagcttgacacactccatcatcgtcgacatggtttcagctactaagttagttggaca |
402 |
Q |
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| T |
32739543 |
gagtgtataccagggaagcgaggccaacagaaaaagtagcttgacacactccatcgttgtcgacatggtttcagctactaagtgagttggaca |
32739635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 29133400 - 29133328
Alignment:
| Q |
330 |
aggccaacagaaaaagtagcttgacacactccatcatcgtcgacatggtttcagctactaagttagttggaca |
402 |
Q |
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| T |
29133400 |
aggccaacagaaaaagtagcttgacacactccatcgttgtcgacatggtttcagctagtaagtaagttggaca |
29133328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 7795056 - 7795024
Alignment:
| Q |
36 |
ataagtgacccaagaaagggtagttgtccaact |
68 |
Q |
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| T |
7795056 |
ataagtgacccaagaaagggttgttgtccaact |
7795024 |
T |
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