View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7386_high_4 (Length: 420)
Name: NF7386_high_4
Description: NF7386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7386_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 14321435 - 14321030
Alignment:
| Q |
1 |
gtcgcctttctaccggtggtaaaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgtcaagggtcgtgat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
14321435 |
gtcgcctttctaccggtggtacaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtcgtcgacttaaaggtttgtcaagggtcgcgat |
14321336 |
T |
|
| Q |
101 |
gcggtgttgtatctagtttatggatggttggtggcaatttgttttaagatctaccgcctccgtgcttgtgggttggtgttttttatattagtcgcggttg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
14321335 |
gcggtgttgtatctagtttctggatggttggtgacaatttgttttaagatctaccacctccgtgccggtgggttggtgtttttgatattcgtcgcggttg |
14321236 |
T |
|
| Q |
201 |
tttcaggtgccaccggcggactgtgatgagcatcgtctttcagttgtttgccctcttaatatatgtatctcatgattgattctgactaatatgatatctc |
300 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
14321235 |
tttaaggtgccaccggcggactatgatgagcatcgtctttcaattgtttgcccccttaatatatgtatctcatgatcgattttgactaatatgatatctc |
14321136 |
T |
|
| Q |
301 |
gttgttctctatgtttggcttggattgtggagttcgaaagagctgtttagcttgctgacatttgttccagggagttgatggtatgtggctccgcttccgt |
400 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14321135 |
gtcgttctctatgtttggcttggattgtgg-gttagaaagagccgtttagcttgttgacatttgttccagggagttgatggtatgtgggtccgcttccgt |
14321037 |
T |
|
| Q |
401 |
gttgatg |
407 |
Q |
| |
|
||||||| |
|
|
| T |
14321036 |
gttgatg |
14321030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 41907708 - 41907831
Alignment:
| Q |
37 |
tcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgtcaagggtcgtgatgcggtgttgtatctagtttatggatggttggtggca |
136 |
Q |
| |
|
||||||| |||| ||||||||||||| |||| || |||| |||||||| ||||||| ||||| ||||||||||| ||||| | |||||||| |||| |
|
|
| T |
41907708 |
tcccaacattctccggttgtcctcttcgatgccgttgactgaaaggttttccaagggttgtgatatggtgttgtatccagtttctagatggttgctggcg |
41907807 |
T |
|
| Q |
137 |
atttgttttaagatctaccgcctc |
160 |
Q |
| |
|
|| |||||| |||| ||||||||| |
|
|
| T |
41907808 |
atctgttttcagatttaccgcctc |
41907831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University