View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7386_low_1 (Length: 668)

Name: NF7386_low_1
Description: NF7386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7386_low_1
NF7386_low_1
[»] chr1 (2 HSPs)
chr1 (14-648)||(50081256-50081889)
chr1 (493-587)||(50556485-50556579)
[»] chr2 (3 HSPs)
chr2 (491-555)||(30312821-30312885)
chr2 (493-573)||(3594222-3594302)
chr2 (529-589)||(6421801-6421861)
[»] chr6 (4 HSPs)
chr6 (493-568)||(6071166-6071241)
chr6 (493-585)||(12092514-12092606)
chr6 (493-555)||(8481960-8482022)
chr6 (501-555)||(16454949-16455003)
[»] chr3 (3 HSPs)
chr3 (497-555)||(46546387-46546445)
chr3 (501-568)||(32462607-32462674)
chr3 (529-589)||(47964546-47964606)
[»] chr4 (4 HSPs)
chr4 (490-520)||(18975900-18975930)
chr4 (140-194)||(45834462-45834516)
chr4 (493-554)||(34544140-34544201)
chr4 (493-589)||(15841394-15841490)
[»] chr8 (1 HSPs)
chr8 (493-589)||(40991787-40991883)
[»] chr7 (1 HSPs)
chr7 (529-589)||(7517650-7517710)
[»] chr5 (1 HSPs)
chr5 (493-581)||(2828088-2828176)


Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 14 - 648
Target Start/End: Complemental strand, 50081889 - 50081256
Alignment:
Q  14 ggacatcacatgtctggacgaacagtttttgaaatgatattggccattttctaacttgtcatctatccttccaacatactagcatgaatgagagatctgc 113  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50081889 ggacatcacatgtctggacgaacagttttggaaatgatattggccattttctaacttgtcatctatccttccaacatactagcatgaatgagagatctgc 50081790  T
Q  114 catgacccttagatgttgtatagtaggtgtaggttaaaagtctgatattgtttataaaaatcgaggttgaatgttttataaataagaagatatttaaact 213  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  50081789 catgacccttagatgttgtatagtacgtgtaggttaaaagtctaatattgtttataaaaatcgaggttgaacgttttataaataagaagatatataaact 50081690  T
Q  214 cattgttcttaatccaatatggatgatcattcgggctcctccgtaacccaattgtggtatcactgtcatggttcaactaactccttatgtcaaaagtctt 313  Q
     |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50081689 tattgttcttaatccaacatggatgatcattcgggctcctctgtaacccaattgtggtatcaccgtcatggttcaactaactccttatgtcaaaagtctt 50081590  T
Q  314 tctgaccaatacaagtcgaatgatggtgcaagtatgtctatatggatgtaaaagcttccgcctgagggggaacaaattgaattgaaggactcacacttaa 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50081589 tctgaccaatacaagtcgaatgatggtgcaagtatgtctatatggatgtaaaagcttccgtctgagggggaacaaattgaattgaaggactcacacttaa 50081490  T
Q  414 agtagagatttgttgtctaattgcgtgatttagaagttatattgcttgaaaaaatggagnnnnnnnnnnnnnaggttgaaaaagtggaggttgaacactt 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||    
T  50081489 agtagagatttgttgtctaattgcgtgatttagaagttatattgcttgaaaaaatggag-ttttttttttttaggttgaaaaagtggaggttgaacactt 50081391  T
Q  514 tataaattatatgttccataaacctattgccttaaggttttgaattaaagtgtggtatctaactcacttgtgtggtatctgcacaataattgcaataatc 613  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50081390 tataaattatatgttccataaacctattgccttatggttttgaattaaagtgtggtatctaactcacttgtgtggtatctgcacaataattgcaataatc 50081291  T
Q  614 aattcaccgatcttgcagtcttgaaggggagcata 648  Q
    |||||||||||||||||||||||||||||||||||    
T  50081290 aattcaccgatcttgcagtcttgaaggggagcata 50081256  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 587
Target Start/End: Original strand, 50556485 - 50556579
Alignment:
Q  493 aaaagtggaggttgaacactttataaattatatgttccataaacctattgccttaaggttttgaattaaagtgtggtatctaactcacttgtgtg 587  Q
    ||||| |||||||||||| ||||||| | | |   ||| ||||||||||  ||||||||||||||| ||||| ||||||||  ||||||||||||    
T  50556485 aaaagcggaggttgaacaatttataagtgagagaatccgtaaacctattttcttaaggttttgaataaaagtttggtatctctctcacttgtgtg 50556579  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 30312821 - 30312885
Alignment:
Q  491 gaaaaagtggaggttgaacactttataaattatatgttccataaacctattgccttaaggttttg 555  Q
    |||||||||||||||||||||||||||| ||| |||  |||||||| |||| |||||||||||||    
T  30312821 gaaaaagtggaggttgaacactttataacttagatgacccataaacttatttccttaaggttttg 30312885  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 573
Target Start/End: Complemental strand, 3594302 - 3594222
Alignment:
Q  493 aaaagtggaggttgaacactttataaattatatgttccataaacctattgccttaaggttttgaattaaagtgtggtatct 573  Q
    |||||||||||| ||||||||||||| | ||| | |||||||||  ||||| ||||| |||||| | | |||||| |||||    
T  3594302 aaaagtggaggtcgaacactttataagtgataggatccataaacacattgctttaagattttgagtaagagtgtgatatct 3594222  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 589
Target Start/End: Original strand, 6421801 - 6421861
Alignment:
Q  529 ccataaacctattgccttaaggttttgaattaaagtgtggtatctaactcacttgtgtggt 589  Q
    |||||||||||||||||||||||||||  | | |||||||| |||  || |||||||||||    
T  6421801 ccataaacctattgccttaaggttttgggtaagagtgtggtgtctctctaacttgtgtggt 6421861  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 6071166 - 6071241
Alignment:
Q  493 aaaagtggaggttgaacactttataaattatatgttccataaacctattgccttaaggttttgaattaaagtgtgg 568  Q
    |||||||||||||||||||||||||| | | ||| |||||||||  ||||||||||| ||||| || | |||||||    
T  6071166 aaaagtggaggttgaacactttataagtgagatgatccataaactcattgccttaagattttggataagagtgtgg 6071241  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 585
Target Start/End: Complemental strand, 12092606 - 12092514
Alignment:
Q  493 aaaagtggaggttgaacactttataaattatatgttccataaacctattgccttaaggttttgaattaaagtgtggtatctaactcacttgtg 585  Q
    ||||||||||||||| |||||||||| | | | | |||||||||  |||||||||||||||||| | | | |||||| |||  ||||||||||    
T  12092606 aaaagtggaggttgagcactttataagtgagaggatccataaactcattgccttaaggttttgagtaagactgtggtgtctctctcacttgtg 12092514  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 555
Target Start/End: Original strand, 8481960 - 8482022
Alignment:
Q  493 aaaagtggaggttgaacactttataaattatatgttccataaacctattgccttaaggttttg 555  Q
    |||||||||||||||||||||||||||| | |||   |||||||  ||||||||||| |||||    
T  8481960 aaaagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagattttg 8482022  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 555
Target Start/End: Original strand, 16454949 - 16455003
Alignment:
Q  501 aggttgaacactttataaattatatgttccataaacctattgccttaaggttttg 555  Q
    ||||||||||| |||||| | ||| |  |||||||||||||||||||||||||||    
T  16454949 aggttgaacaccttataagtaataggacccataaacctattgccttaaggttttg 16455003  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 555
Target Start/End: Complemental strand, 46546445 - 46546387
Alignment:
Q  497 gtggaggttgaacactttataaattatatgttccataaacctattgccttaaggttttg 555  Q
    |||||||||||||||||||||| ||| |   |||||||||| |||||||||||||||||    
T  46546445 gtggaggttgaacactttataagttagagaatccataaacccattgccttaaggttttg 46546387  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 568
Target Start/End: Complemental strand, 32462674 - 32462607
Alignment:
Q  501 aggttgaacactttataaattatatgttccataaacctattgccttaaggttttgaattaaagtgtgg 568  Q
    ||||||||||| |||||| | | ||| |||||||||||||||| ||||||||||| || | |||||||    
T  32462674 aggttgaacaccttataagtaagatgatccataaacctattgctttaaggttttggataagagtgtgg 32462607  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 589
Target Start/End: Complemental strand, 47964606 - 47964546
Alignment:
Q  529 ccataaacctattgccttaaggttttgaattaaagtgtggtatctaactcacttgtgtggt 589  Q
    |||||||||||||||||||||||||||  | | |||||||  |||  ||||||||||||||    
T  47964606 ccataaacctattgccttaaggttttgggtaagagtgtggcgtctctctcacttgtgtggt 47964546  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 520
Target Start/End: Complemental strand, 18975930 - 18975900
Alignment:
Q  490 tgaaaaagtggaggttgaacactttataaat 520  Q
    |||||||||||||||||||||||||||||||    
T  18975930 tgaaaaagtggaggttgaacactttataaat 18975900  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 45834462 - 45834516
Alignment:
Q  140 gtgtaggttaaaagtctgatattgtttataaaaatcgaggttgaatgttttataa 194  Q
    |||| |||||||||||| |||||||||| |||||| |||||||| | ||||||||    
T  45834462 gtgttggttaaaagtctcatattgtttagaaaaatggaggttgattattttataa 45834516  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 554
Target Start/End: Original strand, 34544140 - 34544201
Alignment:
Q  493 aaaagtggaggttgaacactttataaattatatgttccataaacctattgccttaaggtttt 554  Q
    ||||||||||||||| |||||||||||| | | |  ||||||||  ||||||||||||||||    
T  34544140 aaaagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggtttt 34544201  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 589
Target Start/End: Complemental strand, 15841490 - 15841394
Alignment:
Q  493 aaaagtggaggttgaacactttataaattatatgttccataaacctattgccttaaggttttgaattaaagtgtggtatctaactcacttgtgtggt 589  Q
    |||||||||||||||||||||| ||| | | | | | |||||||  |||||||||||||||||  | | |||||| | |||  ||||||||||||||    
T  15841490 aaaagtggaggttgaacactttgtaagtgagaggattcataaacacattgccttaaggttttgggtaagagtgtgatgtctctctcacttgtgtggt 15841394  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 589
Target Start/End: Original strand, 40991787 - 40991883
Alignment:
Q  493 aaaagtggaggttgaacactttataaattatatgttccataaacctattgccttaaggttttgaattaaagtgtggtatctaactcacttgtgtggt 589  Q
    ||||||||||||||||||||| |||| | | | |  ||||||||| | ||||| |||||||||  ||||  |||||| || ||||||| ||||||||    
T  40991787 aaaagtggaggttgaacacttcataagtgagaggacccataaacccaatgcctcaaggttttgggttaagatgtggtgtccaactcacctgtgtggt 40991883  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 589
Target Start/End: Original strand, 7517650 - 7517710
Alignment:
Q  529 ccataaacctattgccttaaggttttgaattaaagtgtggtatctaactcacttgtgtggt 589  Q
    ||||||||| |||||||||||||||||  | | |||||||| |||  ||||||||||||||    
T  7517650 ccataaacccattgccttaaggttttgggtaagagtgtggtgtctgtctcacttgtgtggt 7517710  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 581
Target Start/End: Original strand, 2828088 - 2828176
Alignment:
Q  493 aaaagtggaggttgaacactttataaattatatgttccataaacctattgccttaaggttttgaattaaagtgtggtatctaactcact 581  Q
    |||||||||||||| ||||||||||| | | ||  |||||||  ||| |||||||||||||||  ||||||| || |  ||||||||||    
T  2828088 aaaagtggaggttgtacactttataagtgaaataatccataagtctaatgccttaaggttttgggttaaagtttgatgactaactcact 2828176  T

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