View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7386_low_11 (Length: 404)

Name: NF7386_low_11
Description: NF7386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7386_low_11
NF7386_low_11
[»] chr1 (15 HSPs)
chr1 (78-385)||(27563114-27563423)
chr1 (21-59)||(47011350-47011388)
chr1 (21-60)||(52222329-52222368)
chr1 (21-59)||(21909947-21909985)
chr1 (21-60)||(34061938-34061977)
chr1 (21-60)||(37255121-37255160)
chr1 (21-60)||(40328978-40329017)
chr1 (21-63)||(4838303-4838345)
chr1 (21-59)||(8751538-8751576)
chr1 (22-60)||(40341837-40341875)
chr1 (21-59)||(49363490-49363528)
chr1 (21-58)||(24478771-24478808)
chr1 (21-62)||(46517938-46517979)
chr1 (26-59)||(50144250-50144283)
chr1 (22-54)||(40328868-40328900)
[»] chr7 (19 HSPs)
chr7 (21-63)||(25270603-25270645)
chr7 (21-59)||(36711535-36711573)
chr7 (16-60)||(31670995-31671039)
chr7 (21-61)||(46477127-46477167)
chr7 (21-61)||(48135460-48135500)
chr7 (21-60)||(7345004-7345043)
chr7 (21-60)||(45833296-45833335)
chr7 (26-60)||(3838114-3838148)
chr7 (21-59)||(20353053-20353091)
chr7 (21-59)||(28003174-28003212)
chr7 (21-63)||(35160855-35160897)
chr7 (21-59)||(37066288-37066326)
chr7 (21-59)||(46658838-46658876)
chr7 (21-59)||(48392972-48393010)
chr7 (21-62)||(27940851-27940892)
chr7 (27-60)||(31549788-31549821)
chr7 (31-60)||(39024058-39024087)
chr7 (21-61)||(25099642-25099682)
chr7 (21-57)||(46578371-46578407)
[»] chr6 (9 HSPs)
chr6 (21-59)||(1858383-1858421)
chr6 (26-61)||(256190-256225)
chr6 (21-60)||(32364122-32364161)
chr6 (21-60)||(33169288-33169327)
chr6 (21-59)||(4156445-4156483)
chr6 (21-59)||(17854832-17854870)
chr6 (21-59)||(19687573-19687611)
chr6 (21-62)||(14804155-14804196)
chr6 (23-60)||(14804271-14804308)
[»] chr8 (8 HSPs)
chr8 (21-62)||(27781032-27781073)
chr8 (21-60)||(43484038-43484077)
chr8 (21-59)||(24726031-24726069)
chr8 (21-62)||(40802196-40802237)
chr8 (21-59)||(42631775-42631813)
chr8 (27-60)||(2827466-2827499)
chr8 (22-55)||(42631884-42631917)
chr8 (31-59)||(29322018-29322046)
[»] chr4 (29 HSPs)
chr4 (21-61)||(44496802-44496842)
chr4 (21-65)||(53508490-53508534)
chr4 (21-59)||(23754298-23754336)
chr4 (21-59)||(26206700-26206738)
chr4 (21-65)||(51126095-51126139)
chr4 (16-59)||(9968431-9968474)
chr4 (21-60)||(29978487-29978526)
chr4 (21-60)||(33379438-33379476)
chr4 (21-60)||(33811249-33811288)
chr4 (21-60)||(45890917-45890956)
chr4 (21-60)||(46779400-46779439)
chr4 (21-60)||(51975230-51975269)
chr4 (21-60)||(53551701-53551740)
chr4 (21-60)||(55616920-55616959)
chr4 (21-60)||(55624224-55624263)
chr4 (21-60)||(56420426-56420465)
chr4 (21-59)||(9968297-9968335)
chr4 (27-65)||(21003930-21003968)
chr4 (21-59)||(44495686-44495724)
chr4 (21-63)||(44639852-44639894)
chr4 (22-60)||(46495638-46495676)
chr4 (21-59)||(48079622-48079660)
chr4 (21-59)||(50038446-50038484)
chr4 (21-59)||(50045668-50045706)
chr4 (21-59)||(56420537-56420575)
chr4 (26-59)||(48902109-48902142)
chr4 (21-62)||(52256848-52256889)
chr4 (21-54)||(55501308-55501341)
chr4 (31-59)||(8014299-8014327)
[»] chr5 (19 HSPs)
chr5 (21-60)||(6638225-6638264)
chr5 (21-60)||(27304732-27304771)
chr5 (21-59)||(20361973-20362011)
chr5 (21-60)||(14064805-14064844)
chr5 (21-60)||(43585490-43585529)
chr5 (21-59)||(29255757-29255795)
chr5 (21-59)||(35245714-35245752)
chr5 (21-59)||(38283379-38283417)
chr5 (21-59)||(40208583-40208621)
chr5 (27-60)||(9005059-9005092)
chr5 (21-62)||(9247068-9247108)
chr5 (21-62)||(19784629-19784670)
chr5 (21-62)||(29807182-29807223)
chr5 (21-57)||(1723349-1723385)
chr5 (21-53)||(3161332-3161364)
chr5 (28-60)||(13420547-13420579)
chr5 (21-61)||(29112278-29112318)
chr5 (21-61)||(32146821-32146861)
chr5 (31-59)||(36474918-36474946)
[»] chr2 (20 HSPs)
chr2 (21-60)||(45123790-45123829)
chr2 (21-59)||(32473467-32473505)
chr2 (21-59)||(42579125-42579163)
chr2 (21-61)||(9157968-9158008)
chr2 (21-60)||(4898160-4898199)
chr2 (21-60)||(4945554-4945593)
chr2 (21-60)||(25668517-25668556)
chr2 (21-60)||(26567742-26567781)
chr2 (21-60)||(37486105-37486144)
chr2 (21-63)||(5204884-5204926)
chr2 (21-59)||(8554667-8554705)
chr2 (21-59)||(9709654-9709692)
chr2 (21-59)||(24971311-24971349)
chr2 (26-60)||(26269404-26269438)
chr2 (21-59)||(43514752-43514790)
chr2 (21-62)||(20195395-20195436)
chr2 (19-63)||(324895-324939)
chr2 (19-59)||(4898269-4898309)
chr2 (19-59)||(4945663-4945703)
chr2 (21-61)||(33363553-33363593)
[»] chr3 (19 HSPs)
chr3 (21-62)||(18480982-18481023)
chr3 (21-60)||(12569208-12569247)
chr3 (21-60)||(13545672-13545711)
chr3 (21-60)||(17940183-17940222)
chr3 (21-60)||(19679068-19679107)
chr3 (21-60)||(25995648-25995687)
chr3 (21-60)||(34935533-34935572)
chr3 (21-59)||(24599985-24600023)
chr3 (21-59)||(32997151-32997189)
chr3 (21-59)||(39530501-39530539)
chr3 (21-62)||(5790642-5790683)
chr3 (21-58)||(22995802-22995839)
chr3 (19-59)||(28906716-28906757)
chr3 (21-62)||(29076631-29076672)
chr3 (21-62)||(51256673-51256714)
chr3 (16-60)||(35760734-35760778)
chr3 (29-57)||(48126721-48126749)
chr3 (27-59)||(54726051-54726083)
chr3 (27-59)||(54726167-54726199)
[»] scaffold0111 (2 HSPs)
scaffold0111 (21-56)||(38113-38148)
scaffold0111 (26-59)||(38003-38036)
[»] scaffold0070 (1 HSPs)
scaffold0070 (21-59)||(42706-42744)
[»] scaffold0168 (1 HSPs)
scaffold0168 (31-60)||(25019-25048)
[»] scaffold0280 (1 HSPs)
scaffold0280 (21-65)||(13527-13571)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 78 - 385
Target Start/End: Complemental strand, 27563423 - 27563114
Alignment:
Q  78 tagagatatcgtccttcaaaatacact-ttctaaatagacaccattt-tttgacattacaatagtgtgcctatttagttggttttaaagaaatgaacaaa 175  Q
    |||||||||| |||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27563423 tagagatatcatccttcaaaatacaatcttctgaatagacaccatttgtttgacattacaatagtgtgcctatttagttggttttaaagaaatgaacaaa 27563324  T
Q  176 ccttttgttgtgaatgctctaattaggcgaattgttattaagttaatgcgacacagatgactttagtaagttggtatcttaaaatttgactaaactttag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  27563323 ccttttgttgtgaatgctctaattaggcgaattgttattaagttaatgcgacacaaatgactgtagtaagttggtatcttaaaatttgactaaactttag 27563224  T
Q  276 aatctctttataataaatgatgcaggtgaaatggaaggaagatgctggatcaataaatatcaatggcacagagttttttctgcatcaatgtcattggcac 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27563223 aatctctttataataaatgatgcaggtgaaatggaaggaagatgctggatcaataaatatcaatggcacagagttttttctgcatcaatgtcattggcac 27563124  T
Q  376 gcaccttctg 385  Q
    ||||||||||    
T  27563123 gcaccttctg 27563114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 47011350 - 47011388
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47011350 aaaagtaaaatttgcttatatttaaaaatggagggagta 47011388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 52222329 - 52222368
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  52222329 aaaagtaaaatttgcttatattttaaaatggagggagtat 52222368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 21909947 - 21909985
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  21909947 aaaagtaaaatttgcttatatttaaaaacggagggagta 21909985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 34061977 - 34061938
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  34061977 aaaagtaaaatttgtttatatttaaaaacggagggagtat 34061938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 37255160 - 37255121
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  37255160 aaaagtaaaatttgcttatattaaaaaacggagggagtat 37255121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 40328978 - 40329017
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  40328978 aaaagtaaaatttgtttatatttaaaaacggagggagtat 40329017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 4838345 - 4838303
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgtt 63  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||    
T  4838345 aaaagtaaaatttgtttatatttagaaacggagggagtatgtt 4838303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 8751538 - 8751576
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  8751538 aaaaataaaatttgcttatattttaaaatggagggagta 8751576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 40341837 - 40341875
Alignment:
Q  22 aaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  40341837 aaagtaaaatttgtttatatttaaaaacggagggagtat 40341875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 49363490 - 49363528
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  49363490 aaaagtaaaatttgcttatattttaaaacggagggagta 49363528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 24478771 - 24478808
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagt 58  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  24478771 aaaagtaaaatttgcttatatttaaaaacggagagagt 24478808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 46517979 - 46517938
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    ||||||||||||||||||||||| |||| ||||| |||||||    
T  46517979 aaaagtaaaatttgcttatatttcaaaacggaggaagtatgt 46517938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 50144250 - 50144283
Alignment:
Q  26 taaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||| ||||||||||||||||    
T  50144250 taaaatttgcttatattaaaaaatggagggagta 50144283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 40328900 - 40328868
Alignment:
Q  22 aaagtaaaatttgcttatatttaaaaatggagg 54  Q
    ||||||||||||||||||||||||||| |||||    
T  40328900 aaagtaaaatttgcttatatttaaaaacggagg 40328868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 25270603 - 25270645
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgtt 63  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  25270603 aaaagtaaaatttgcttatatttaaaaacggagggagtatgtt 25270645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 36711573 - 36711535
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36711573 aaaagtaaaatttgcttatatttaaaaatggagggagta 36711535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 31671039 - 31670995
Alignment:
Q  16 acatcaaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||    
T  31671039 acataaaaagtaaaatttacttatatttaaaaacggagggagtat 31670995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 46477167 - 46477127
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatg 61  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  46477167 aaaagtaaaatttgcttatattttaaaatggaggaagtatg 46477127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 48135500 - 48135460
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatg 61  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  48135500 aaaagtaaaatttgcttatatttaaatacggagggagtatg 48135460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 7345004 - 7345043
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  7345004 aaaagtaaaatttgcttatatttagaaacggagggagtat 7345043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 45833296 - 45833335
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  45833296 aaaagtaaaatttgcttatatttaaaaacggaggaagtat 45833335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 3838148 - 3838114
Alignment:
Q  26 taaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||| |||||||||||||||||    
T  3838148 taaaatttgcttatattaaaaaatggagggagtat 3838114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 20353091 - 20353053
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  20353091 aaaagtaaaatttgcttatatttaaaaacggatggagta 20353053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 28003212 - 28003174
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  28003212 aaaagtaaaatttgcttatattttaaaacggagggagta 28003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 35160855 - 35160897
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgtt 63  Q
    |||||| || |||||||||||||||||| ||||||||||||||    
T  35160855 aaaagtcaattttgcttatatttaaaaacggagggagtatgtt 35160897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 37066288 - 37066326
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  37066288 aaaagtaaaatttgcttatattttaaaacggagggagta 37066326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 46658838 - 46658876
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  46658838 aaaagtaaaatttgcttatattttaaaacggagggagta 46658876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 48392972 - 48393010
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  48392972 aaaagtaaaatttgcttataattaataatggagggagta 48393010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 27940851 - 27940892
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  27940851 aaaagtaaaatttgcttatattttgaaacggagggagtatgt 27940892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 31549821 - 31549788
Alignment:
Q  27 aaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||| |||||||||||||||||    
T  31549821 aaaatttgcttatattaaaaaatggagggagtat 31549788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 39024087 - 39024058
Alignment:
Q  31 tttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||||||||||||    
T  39024087 tttgcttatatttaaaaatggagggagtat 39024058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 25099642 - 25099682
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatg 61  Q
    |||||| || |||||||||||||||||| ||||||||||||    
T  25099642 aaaagttaattttgcttatatttaaaaacggagggagtatg 25099682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 46578371 - 46578407
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggag 57  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  46578371 aaaagtaaaatttgcttatattttaaaacggagggag 46578407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 1858383 - 1858421
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1858383 aaaagtaaaatttgcttatatttaaaaatggagggagta 1858421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 256190 - 256225
Alignment:
Q  26 taaaatttgcttatatttaaaaatggagggagtatg 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  256190 taaaatttgcttataattaaaaatggagggagtatg 256225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 32364122 - 32364161
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  32364122 aaaagtaaattttgcttatatttaaaaacggagggagtat 32364161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 33169288 - 33169327
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  33169288 aaaagtaaaatttgcttatatttagaaacggagggagtat 33169327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 4156445 - 4156483
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||| || |||||||||||||||||||||||||||||    
T  4156445 aaaagtcaattttgcttatatttaaaaatggagggagta 4156483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 17854870 - 17854832
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  17854870 aaaaataaaatttgtttatatttaaaaatggagggagta 17854832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 19687573 - 19687611
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  19687573 aaaagtaaaatttgcatatatttaaaaacggagggagta 19687611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 14804196 - 14804155
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    ||||||||||||| ||||||||| |||| |||||||||||||    
T  14804196 aaaagtaaaatttacttatattttaaaacggagggagtatgt 14804155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 14804271 - 14804308
Alignment:
Q  23 aagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  14804271 aagtaaaatttgcttatattttaaaacggagggagtat 14804308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 27781073 - 27781032
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  27781073 aaaagtaaaatttgcttatatttagaaatggagggagtatgt 27781032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 43484038 - 43484077
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  43484038 aaaagtaaaatttgcttatatttaaaaacggagggagtat 43484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 24726069 - 24726031
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  24726069 aaaagtaaaatttgcttatatttaaaaacggagggagta 24726031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 40802237 - 40802196
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  40802237 aaaagtaaaatttgcttatatttagaaacggagggagtatgt 40802196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 42631813 - 42631775
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  42631813 aaaagtaaaatttgcttatatttagaaacggagggagta 42631775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 2827466 - 2827499
Alignment:
Q  27 aaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||| |||||||||||||||||||||||||||||    
T  2827466 aaaaattgcttatatttaaaaatggagggagtat 2827499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 42631884 - 42631917
Alignment:
Q  22 aaagtaaaatttgcttatatttaaaaatggaggg 55  Q
    ||||||||||||||||||||||||||| ||||||    
T  42631884 aaagtaaaatttgcttatatttaaaaacggaggg 42631917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 29322046 - 29322018
Alignment:
Q  31 tttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||||    
T  29322046 tttgcttatatttaaaaatggagggagta 29322018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 44496842 - 44496802
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatg 61  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  44496842 aaaaataaaatttgcttatatttaaaaatggagggagtatg 44496802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 53508534 - 53508490
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgttac 65  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  53508534 aaaagtaaaatttgcttatatttagaaacggagggagtatgttac 53508490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 23754298 - 23754336
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  23754298 aaaagtaaaatttgcttatattttaaaatggagggagta 23754336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 26206700 - 26206738
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  26206700 aaaagtaaaatttgcttatatttaaaaatggaaggagta 26206738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 51126139 - 51126095
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgttac 65  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||    
T  51126139 aaaagtaaaatttgcttatattttaaaacggagggagtattttac 51126095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 9968431 - 9968474
Alignment:
Q  16 acatcaaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||| |||| ||||||||||||||||||||||| ||||||||||    
T  9968431 acataaaaaataaaatttgcttatatttaaaaacggagggagta 9968474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 29978526 - 29978487
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  29978526 aaaagtaaaatttgcttatattttaaaatggatggagtat 29978487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 33379476 - 33379438
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  33379476 aaaagtaaaatttgcttatatttaaaaat-gagggagtat 33379438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 33811249 - 33811288
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  33811249 aaaagtaaaatttgcttatatttagaaacggagggagtat 33811288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 45890956 - 45890917
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  45890956 aaaagtaaaatttgcttatatttaaaaagagagggagtat 45890917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 46779400 - 46779439
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  46779400 aaaaataaaatttgcttatatttaaaaacggagggagtat 46779439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 51975230 - 51975269
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  51975230 aaaagtaaaatttgcttatattttaaaacggagggagtat 51975269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 53551701 - 53551740
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  53551701 aaaagtaaaatttgcttatatttagaaacggagggagtat 53551740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 55616920 - 55616959
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  55616920 aaaagtaaattttgcttatatttaaagatggagggagtat 55616959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 55624224 - 55624263
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  55624224 aaaagtaaattttgcttatatttaaagatggagggagtat 55624263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 56420465 - 56420426
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  56420465 aaaagtaaaatttgtttatatttaaaaacggagggagtat 56420426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 9968335 - 9968297
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  9968335 aaaagtaaaatttacttatatttaaaaacggagggagta 9968297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 21003968 - 21003930
Alignment:
Q  27 aaaatttgcttatatttaaaaatggagggagtatgttac 65  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  21003968 aaaatttgcttatatttaagaacggagggagtatgttac 21003930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 44495724 - 44495686
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  44495724 aaaagtcaaatttgcttatatttaaaaacggagggagta 44495686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 44639852 - 44639894
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgtt 63  Q
    |||||| |||||||||||||||||| || ||||||||||||||    
T  44639852 aaaagtgaaatttgcttatatttaagaacggagggagtatgtt 44639894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 46495638 - 46495676
Alignment:
Q  22 aaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  46495638 aaagtcaattttgcttatatttaaaaatggagggagtat 46495676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 48079622 - 48079660
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  48079622 aaaagtaaaatttgcttatattttaaaacggagggagta 48079660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 50038484 - 50038446
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  50038484 aaaagtaaaatttgcttatatttagaaacggagggagta 50038446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 50045706 - 50045668
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  50045706 aaaagtaaaatttgcttatatttagaaacggagggagta 50045668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 56420537 - 56420575
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  56420537 aaaagtaaaatttgcttatatttagaaacggagggagta 56420575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 48902109 - 48902142
Alignment:
Q  26 taaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| ||||||||||    
T  48902109 taaaatttgcttatatttaaaaacggagggagta 48902142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 52256848 - 52256889
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||| |||||||||||||||||| |||| |||||||||||||    
T  52256848 aaaaataaaatttgcttatattttaaaacggagggagtatgt 52256889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 55501308 - 55501341
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagg 54  Q
    |||||||||||||||||||||||||||| |||||    
T  55501308 aaaagtaaaatttgcttatatttaaaaacggagg 55501341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 8014299 - 8014327
Alignment:
Q  31 tttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||||    
T  8014299 tttgcttatatttaaaaatggagggagta 8014327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 6638264 - 6638225
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  6638264 aaaagtaaaatttgcttatatttaaaaacggagggagtat 6638225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 27304771 - 27304732
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  27304771 aaaagtaaaatttgattatatttaaaaatggagggagtat 27304732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 20362011 - 20361973
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  20362011 aaaagtaaaatttgcttatatttaaaaacggagggagta 20361973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 14064844 - 14064805
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  14064844 aaaagtaaaatttacttatatttaaaaacggagggagtat 14064805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 43585529 - 43585490
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  43585529 aaaagtaaaatttgtttatatttaaaaacggagggagtat 43585490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 29255757 - 29255795
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  29255757 aaaagtaaaatttgcttatatttagaaacggagggagta 29255795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 35245714 - 35245752
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  35245714 aaaagtaaaatttgcttatattttaaaacggagggagta 35245752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 38283417 - 38283379
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  38283417 aaaagtaaaatttgcttatattttaaaacggagggagta 38283379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 40208583 - 40208621
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  40208583 aaaagtaaaatttacttatatttagaaatggagggagta 40208621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 9005059 - 9005092
Alignment:
Q  27 aaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||| |||||||||||    
T  9005059 aaaatttgcttatatttaaaaacggagggagtat 9005092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 9247068 - 9247108
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
T  9247068 aaaagtaaaatttgtttatattt-aaaatggagggagtatgt 9247108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 19784629 - 19784670
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  19784629 aaaagtaaaatttgcttatattttgaaacggagggagtatgt 19784670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 29807182 - 29807223
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||||||||||||||||||||| | ||| |||||||||||||    
T  29807182 aaaagtaaaatttgcttatattaagaaacggagggagtatgt 29807223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 1723349 - 1723385
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggag 57  Q
    |||||||||||||||||||||||||||| | ||||||    
T  1723349 aaaagtaaaatttgcttatatttaaaaacgaagggag 1723385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 3161332 - 3161364
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggag 53  Q
    |||||||||||||||||||||||||||| ||||    
T  3161332 aaaagtaaaatttgcttatatttaaaaacggag 3161364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 13420547 - 13420579
Alignment:
Q  28 aaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||| |||||||||||    
T  13420547 aaatttgcttatatttaaaaacggagggagtat 13420579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 29112318 - 29112278
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatg 61  Q
    |||| ||||||||||||||| ||||||| ||||||||||||    
T  29112318 aaaaataaaatttgcttataattaaaaacggagggagtatg 29112278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 32146861 - 32146821
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatg 61  Q
    ||||||||| |||||||||||||||||| |||| |||||||    
T  32146861 aaaagtaaattttgcttatatttaaaaacggagagagtatg 32146821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 36474918 - 36474946
Alignment:
Q  31 tttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||||||||    
T  36474918 tttgcttatatttaaaaatggagggagta 36474946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 45123829 - 45123790
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  45123829 aaaagtaaaatttgcttatatttaaaaacggagggagtat 45123790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 32473505 - 32473467
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  32473505 aaaaataaaatttgcttatatttaaaaatggagggagta 32473467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 42579125 - 42579163
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  42579125 aaaagtaaaatttacttatatttaaaaatggagggagta 42579163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 9158008 - 9157968
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatg 61  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  9158008 aaaagtaaaatttgcttatatttagaaacggagggagtatg 9157968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 4898199 - 4898160
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  4898199 aaaagtaaaatttgcttatatttagaaacggagggagtat 4898160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 4945593 - 4945554
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  4945593 aaaagtaaaatttgcttatatttagaaacggagggagtat 4945554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 25668517 - 25668556
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  25668517 aaaagtaaaatttgcttatatttagaaacggagggagtat 25668556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 26567742 - 26567781
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  26567742 aaaagtaaaatttgcttatattttaaaacggagggagtat 26567781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 37486105 - 37486144
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  37486105 aaaagtaaaatttgcttatatttagaaacggagggagtat 37486144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 5204926 - 5204884
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgtt 63  Q
    ||||||||||||||||||||||| | || ||||||||||||||    
T  5204926 aaaagtaaaatttgcttatattttagaacggagggagtatgtt 5204884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 8554705 - 8554667
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  8554705 aaaagtaaaatttgcttatattaaaaaacggagggagta 8554667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 9709692 - 9709654
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  9709692 aaaagtaaaatttgcttatatttagaaatgaagggagta 9709654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 24971311 - 24971349
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  24971311 aaaagtaaaatttgcttatattttgaaatggagggagta 24971349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 26269404 - 26269438
Alignment:
Q  26 taaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||| |||||||||||||||    
T  26269404 taaaatttgcttatatttagaaatggagggagtat 26269438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 43514790 - 43514752
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  43514790 aaaagtaaaatttgcttatattttaaaagggagggagta 43514752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 20195395 - 20195436
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||| |||||||||||||||||| |||||||| |||||||||    
T  20195395 aaaactaaaatttgcttatattttaaaatggatggagtatgt 20195436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 324895 - 324939
Alignment:
Q  19 tcaaaagtaaaatttgcttatatttaaaaatggagggagtatgtt 63  Q
    |||||||||||||||||||||||||| ||| |||  |||||||||    
T  324895 tcaaaagtaaaatttgcttatatttagaaacggatagagtatgtt 324939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 4898269 - 4898309
Alignment:
Q  19 tcaaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||| ||||||||| ||| ||||||||||    
T  4898269 tcaaaagtaaaatttgtttatatttagaaacggagggagta 4898309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 4945663 - 4945703
Alignment:
Q  19 tcaaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||| ||||||||| ||| ||||||||||    
T  4945663 tcaaaagtaaaatttgtttatatttagaaacggagggagta 4945703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 33363593 - 33363553
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatg 61  Q
    ||||||| | |||||||||||||||||| ||||||||||||    
T  33363593 aaaagtagattttgcttatatttaaaaacggagggagtatg 33363553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 18480982 - 18481023
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  18480982 aaaagtaaaatttgcttatatttaaaaacggaggaagtatgt 18481023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 12569208 - 12569247
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  12569208 aaaagtaaaatttgcttatattttaaaacggagggagtat 12569247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 13545672 - 13545711
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  13545672 aaaagtaaaatttgcttatattttaaaacggagggagtat 13545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 17940222 - 17940183
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  17940222 aaaagtaaattttgcttatatttaaaaacggagggagtat 17940183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 19679068 - 19679107
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  19679068 aaaagtaaaatttgcttatatttagaaacggagggagtat 19679107  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 25995648 - 25995687
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  25995648 aaaagtcaaatttgcttatatttaaaaacggagggagtat 25995687  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 34935572 - 34935533
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  34935572 aaaagtaaaatttgcttatatttaaaaacggagagagtat 34935533  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 24599985 - 24600023
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  24599985 aaaagtaaaatttgcttatatttaagaacggagggagta 24600023  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 32997189 - 32997151
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  32997189 aaaagtaaaatttgcttatatttaaaaacagagggagta 32997151  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 39530501 - 39530539
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||| || |||||||||||||||||||||||||||||    
T  39530501 aaaagtcaattttgcttatatttaaaaatggagggagta 39530539  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 5790683 - 5790642
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    ||||||||||||||||||||| | |||| |||||||||||||    
T  5790683 aaaagtaaaatttgcttatatattaaaacggagggagtatgt 5790642  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 22995802 - 22995839
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagt 58  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  22995802 aaaagcaaaatttgcttatatttaaaaacggagggagt 22995839  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 28906757 - 28906716
Alignment:
Q  19 tcaaaagtaaaa-tttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  28906757 tcaaaagtaaaaatttgcttatatttaaaaacggagggagta 28906716  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 29076631 - 29076672
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||||| || |||||||||||||| |||||||||||||||||    
T  29076631 aaaagtcaattttgcttatatttagaaatggagggagtatgt 29076672  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 51256673 - 51256714
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgt 62  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  51256673 aaaagtaaaatttgcttatatttataaacggatggagtatgt 51256714  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 35760778 - 35760734
Alignment:
Q  16 acatcaaaagtaaaatttgcttatatttaaaaatggagggagtat 60  Q
    |||| |||||||||||||||||||||||| ||| ||| |||||||    
T  35760778 acataaaaagtaaaatttgcttatatttagaaacggatggagtat 35760734  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 48126749 - 48126721
Alignment:
Q  29 aatttgcttatatttaaaaatggagggag 57  Q
    |||||||||||||||||||||||||||||    
T  48126749 aatttgcttatatttaaaaatggagggag 48126721  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 54726083 - 54726051
Alignment:
Q  27 aaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||| ||||||||||    
T  54726083 aaaatttgcttatatttaaaaacggagggagta 54726051  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 54726167 - 54726199
Alignment:
Q  27 aaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||||||||||| ||||||||||    
T  54726167 aaaatttgcttatatttaaaaacggagggagta 54726199  T

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Target: scaffold0111 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 38113 - 38148
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggaggga 56  Q
    |||||||||||||||||||||||| |||||||||||    
T  38113 aaaagtaaaatttgcttatatttagaaatggaggga 38148  T

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Target: scaffold0111; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 38036 - 38003
Alignment:
Q  26 taaaatttgcttatatttaaaaatggagggagta 59  Q
    ||||||||||||||||||||||| ||||||||||    
T  38036 taaaatttgcttatatttaaaaacggagggagta 38003  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 42706 - 42744
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagta 59  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  42706 aaaagtaaaatttgattatatttagaaatggagggagta 42744  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 25019 - 25048
Alignment:
Q  31 tttgcttatatttaaaaatggagggagtat 60  Q
    ||||||||||||||||||||||||||||||    
T  25019 tttgcttatatttaaaaatggagggagtat 25048  T

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Target: scaffold0280 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 13571 - 13527
Alignment:
Q  21 aaaagtaaaatttgcttatatttaaaaatggagggagtatgttac 65  Q
    |||||| || |||||||||||||||||| |||| |||||||||||    
T  13571 aaaagtcaattttgcttatatttaaaaacggagagagtatgttac 13527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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