View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7386_low_16 (Length: 245)

Name: NF7386_low_16
Description: NF7386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7386_low_16
NF7386_low_16
[»] scaffold0349 (4 HSPs)
scaffold0349 (151-245)||(4455-4549)
scaffold0349 (16-87)||(4148-4219)
scaffold0349 (151-208)||(9097-9156)
scaffold0349 (47-82)||(8427-8462)
[»] chr6 (7 HSPs)
chr6 (151-245)||(27725877-27725971)
chr6 (16-87)||(27725572-27725643)
chr6 (79-152)||(27585408-27585481)
chr6 (151-208)||(27719675-27719734)
chr6 (47-82)||(27719005-27719040)
chr6 (42-82)||(27593810-27593850)
chr6 (42-82)||(27678220-27678260)


Alignment Details
Target: scaffold0349 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 4455 - 4549
Alignment:
Q  151 tatgaaaagatggagtgatggcacacaaggctcacaacaaatttttccttataaagaacatcaaattcagaaattcttgtcactcaaatgctctc 245  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4455 tatgaaacgatggagtgatggcacacaaggctcacaacaaatttgtccttataaagaacatcaaattcagaaattcttgtcactcaaatgctctc 4549  T

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Target: scaffold0349; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 4148 - 4219
Alignment:
Q  16 acacacgattattccagtaggctttcacgttaaatggataattagctatccaacagaactaacataaatatt 87  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  4148 acacacaattatttcagtaggctttcacgttaaatggataattagctatacaacagaactaacataattatt 4219  T

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Target: scaffold0349; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 9097 - 9156
Alignment:
Q  151 tatgaaaagatggagtgatggc--acacaaggctcacaacaaatttttccttataaagaa 208  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||| || ||||||||||    
T  9097 tatgaaacgatggagtgatggcgcacacaaggctcacaacaaatttgtcattataaagaa 9156  T

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Target: scaffold0349; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 8427 - 8462
Alignment:
Q  47 aaatggataattagctatccaacagaactaacataa 82  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8427 aaatggataattagctatccaacggaactaacataa 8462  T

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Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 27725877 - 27725971
Alignment:
Q  151 tatgaaaagatggagtgatggcacacaaggctcacaacaaatttttccttataaagaacatcaaattcagaaattcttgtcactcaaatgctctc 245  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725877 tatgaaacgatggagtgatggcacacaaggctcacaacaaatttgtccttataaagaacatcaaattcagaaattcttgtcactcaaatgctctc 27725971  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 27725572 - 27725643
Alignment:
Q  16 acacacgattattccagtaggctttcacgttaaatggataattagctatccaacagaactaacataaatatt 87  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  27725572 acacacaattatttcagtaggctttcacgttaaatggataattagctatacaacagaactaacataattatt 27725643  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 27585408 - 27585481
Alignment:
Q  79 ataaatattggaaaaataaagattgaattgaaggcaacatcagaatggattgaaagactgggtgatgatattta 152  Q
    |||||| ||||||||| ||||||||| |||| || |||||| ||||||||||||||| | ||| ||||||||||    
T  27585408 ataaatgttggaaaaagaaagattgagttgaggggaacatctgaatggattgaaagattaggtaatgatattta 27585481  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 27719675 - 27719734
Alignment:
Q  151 tatgaaaagatggagtgatggc--acacaaggctcacaacaaatttttccttataaagaa 208  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||| || ||||||||||    
T  27719675 tatgaaacgatggagtgatggcgcacacaaggctcacaacaaatttgtcattataaagaa 27719734  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 27719005 - 27719040
Alignment:
Q  47 aaatggataattagctatccaacagaactaacataa 82  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27719005 aaatggataattagctatccaacggaactaacataa 27719040  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 27593810 - 27593850
Alignment:
Q  42 acgttaaatggataattagctatccaacagaactaacataa 82  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  27593810 acgttaaatgtttaattagctatccaacagaactaatataa 27593850  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 27678260 - 27678220
Alignment:
Q  42 acgttaaatggataattagctatccaacagaactaacataa 82  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  27678260 acgttaaatgtttaattagctatccaacagaactaatataa 27678220  T

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