View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7386_low_17 (Length: 232)
Name: NF7386_low_17
Description: NF7386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7386_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 16639693 - 16639901
Alignment:
| Q |
13 |
atatacccttggaagagaaatttcatggaaacaggaactgtaagtttataaatacaaggactcgttcttagctacatgcttgactaagtttactcaatca |
112 |
Q |
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| T |
16639693 |
atatgcccttggaagagaaatttcatggaaacaggaactgtaagttcataaatacaaggactcgttcttagctacatgcttgactaagggaa---agt-- |
16639787 |
T |
|
| Q |
113 |
gagtggcaaagtttactcaatcaaaatgtaaaatgccagttttgtgagaggctcagaagtc-agagtgttgatctcttccaagtattacacaccaattta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16639788 |
-agtggcaaagtttactcaatcaaaatgtaaaatgccagttttgtgagaggctcagaagtcaagagtgttgatctcttccaagtattacacaccaattta |
16639886 |
T |
|
| Q |
212 |
agtgttgatgtccat |
226 |
Q |
| |
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||||||||||||||| |
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| T |
16639887 |
agtgttgatgtccat |
16639901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 17455945 - 17455737
Alignment:
| Q |
13 |
atatacccttggaagagaaatttcatggaaacaggaactgtaagtttataaatacaaggactcgttcttagctacatgcttgactaagtttactcaatca |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | | |
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| T |
17455945 |
atatgcccttggaagagaaatttcatggaaacaggaactgtaagttcataaatacaaggactcgttcttagctacatgcttgactaagggaa---agt-- |
17455851 |
T |
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| Q |
113 |
gagtggcaaagtttactcaatcaaaatgtaaaatgccagttttgtgagaggctcagaagtc-agagtgttgatctcttccaagtattacacaccaattta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17455850 |
-agtggcaaagtttactcaatcaaaatgtaaaatgccagttttgtgagaggctcagaagtcaagagtgttgatctcttccaagtattacacaccaattta |
17455752 |
T |
|
| Q |
212 |
agtgttgatgtccat |
226 |
Q |
| |
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||||||||||||||| |
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| T |
17455751 |
agtgttgatgtccat |
17455737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 17597269 - 17597477
Alignment:
| Q |
13 |
atatacccttggaagagaaatttcatggaaacaggaactgtaagtttataaatacaaggactcgttcttagctacatgcttgactaagtttactcaatca |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | | |
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|
| T |
17597269 |
atatgcccttggaagagaaatttcatggaaacaggaactgtaagttcataaatacaaggactcgttcttagctacatgcttgactaagggaa---agt-- |
17597363 |
T |
|
| Q |
113 |
gagtggcaaagtttactcaatcaaaatgtaaaatgccagttttgtgagaggctcagaagtc-agagtgttgatctcttccaagtattacacaccaattta |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17597364 |
-agtggcaaagtttactcaatcaaaatgtaaaatgccagttttgtgagaggctcagaagtcaagagtgttgatctcttccaagtattacacaccaattta |
17597462 |
T |
|
| Q |
212 |
agtgttgatgtccat |
226 |
Q |
| |
|
||||||||||||||| |
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|
| T |
17597463 |
agtgttgatgtccat |
17597477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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