View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7386_low_3 (Length: 571)
Name: NF7386_low_3
Description: NF7386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7386_low_3 |
 | |
|
| [»] scaffold1075 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 11 - 556
Target Start/End: Original strand, 17006016 - 17006560
Alignment:
| Q |
11 |
tggacatcaagttcttgaacatgttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
110 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17006016 |
tggacatcaagttcttcaacaggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
17006115 |
T |
|
| Q |
111 |
acacaaggtgaccctccaaaccagnnnnnnnnnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttga |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17006116 |
acacaaggtgaccctccaaaccagaaaaaaa--ggacaggcaagaggcaatctacaaaagatgaccctccaatctagaagaagaaaagcatattctttga |
17006213 |
T |
|
| Q |
211 |
acttccatattggaaggacaatcttctgcgtcataatcttgacccgatgcatattgagaaaaatgtgttggataatatcatatatactttgcttaacgat |
310 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17006214 |
acttccatattggaaggacaatcttttgcgtcataatcttgacccgatgcatatcgagaaaaatgtgttggataatatcatatatactttgcttaacgat |
17006313 |
T |
|
| Q |
311 |
agttcaaagagtaaagaccatgttgatgctcgaagagaccttgaagttatgggcataagatctga-ctttggtgcaatgaaaatggaaaaatttctccga |
409 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17006314 |
agttcaaagaataaagaccatgttgatgctcgaagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccga |
17006413 |
T |
|
| Q |
410 |
caatttttactttaactggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcat |
509 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17006414 |
caatttttactttgactggtaaatgtaagagggaatttttaacaattttaaagaatatcacagtgccggatggttattcaagcaacatttctagatgcat |
17006513 |
T |
|
| Q |
510 |
tgacttggaagctcttaagttgaaaggaacattgaagagtcatgatg |
556 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17006514 |
tgacttggaagctcttaagttgaaaggaatgttgaagagtcatgatg |
17006560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1075 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 42 - 556
Target Start/End: Complemental strand, 3050 - 2537
Alignment:
| Q |
42 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagnnnnnnn |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3050 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagaaaaaaa |
2951 |
T |
|
| Q |
142 |
nnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgt |
241 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2950 |
--ggacaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgt |
2853 |
T |
|
| Q |
242 |
cataatcttgacccgatgcatattgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctc |
341 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2852 |
cataatcttgacccgatgcatatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctc |
2753 |
T |
|
| Q |
342 |
gaagagaccttgaagttatgggcataagatctga-ctttggtgcaatgaaaatggaaaaatttctccgacaatttttactttaactggtaaaagtaagag |
440 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
2752 |
gtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttgactggtaaaagtaagag |
2653 |
T |
|
| Q |
441 |
ggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttggaagctcttaagttgaaaggaaca |
540 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2652 |
ggattttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctcttaagttgaaaggaacg |
2553 |
T |
|
| Q |
541 |
ttgaagagtcatgatg |
556 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2552 |
ttgaagagtcatgatg |
2537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University