View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7386_low_4 (Length: 568)
Name: NF7386_low_4
Description: NF7386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7386_low_4 |
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| [»] scaffold0716 (1 HSPs) |
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Alignment Details
Target: scaffold0716 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 552
Target Start/End: Original strand, 6375 - 6902
Alignment:
| Q |
7 |
tttcgtgtttagaacatgcatgtctcgagataaaatttgggatgctcaa----taactgatgtatatgttttgtagtgttgtttctctcagaggtttttt |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
6375 |
tttcgtgtttagaacatgcatgtctcgagataaaatttgggatgctcaacctgtttctgatgtaaatgttttgtagtggtgtttctctcagaggtttttt |
6474 |
T |
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| Q |
103 |
gagactaaattgcagcaacaaggtgtcggtttctcacatgttttgtacgcttggaagaataaatagagtactaacttaattgttaatgagttgtgaagtt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
6475 |
gagactaaattgcagcaacaaggtgtcggtttctcacatgttttgtacgcttggaagaatgaattgagtactaacttaattgttaatgagttgtgaagtt |
6574 |
T |
|
| Q |
203 |
gtgattgatttatcaaggatgtaattgaattacacttcattaaagacaagaacttttgtttatattgtttcgtccattatatttatacctttaatttgtt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
6575 |
gtgattgatttatcaaggatgtaattgaattacactttattaaagacaagaacttttgtttgtattgtttcatccattatatttatacctttaatttgtt |
6674 |
T |
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| Q |
303 |
tgtgtatttgaacaaatgatagaatttttctctcccaaatggttgcatatctatcttccgaagtgttaattttatgattcatactacaaaaattagatgg |
402 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
6675 |
tgtgcatttgaacaaatgatagaatttttctctcccaaatggttggatatctatcttcc-aagtgttaattttatgattcat------------------ |
6755 |
T |
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| Q |
403 |
tcaaatgtttataatgatcatgttttgctgctatatattgtagtatatttttaatttgtattgaaaattcagcttatcaaatatataaggtagttattga |
502 |
Q |
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| T |
6756 |
---aatgtttatgttgatcatgttttgctgctaaatgttgtagtatatttttaatttgtattgaaaattcagcttatcaaatatataaggtagttattga |
6852 |
T |
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| Q |
503 |
aaagtgcaaaccaattttgtccaagaacattagaatatagtcaagatatg |
552 |
Q |
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| T |
6853 |
aaagtgcaaaccaattttgtccaacaacattagaatatagtcaagatatg |
6902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 36161948 - 36161780
Alignment:
| Q |
7 |
tttcgtgtttagaacatgcatgtctcgagataaaatttgggatgctcaa----taactgatgtatatgttttgtagtgttgtttctctcagaggtttttt |
102 |
Q |
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|||| ||||||||||||| | |||| |||||||||||||||||||||| | | |||| | |||||||| |||| | ||||||||||||||||| | |
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| T |
36161948 |
tttcatgtttagaacatgtttctctcaagataaaatttgggatgctcaacctgtttccgatgcaaatgttttgcagtggtctttctctcagaggttttct |
36161849 |
T |
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| Q |
103 |
gagactaaattgcagcaacaaggtgtcggtttctcacatgttttgtacgcttggaagaataaatagagt |
171 |
Q |
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| T |
36161848 |
gagaccaaattgcagcaacaaggtgttggtttctcacatattttgtatgcttggaagaatgaatagagt |
36161780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 229 - 414
Target Start/End: Complemental strand, 36161710 - 36161527
Alignment:
| Q |
229 |
gaattacacttcattaaagacaagaacttttgtttatattgtttcgtccattatatttatacctttaatttgtttgtgtatttgaacaaatgatagaatt |
328 |
Q |
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||||||||||| |||||||| ||||||||||||| || ||||| ||| ||||||| ||||| ||||||| | |||| ||||||| | || ||||||| |
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| T |
36161710 |
gaattacacttgattaaagatgagaacttttgtttgtactgttttatcctttatattcatacccttaatttatctgtgcatttgaatagatcttagaatt |
36161611 |
T |
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| Q |
329 |
tttctctcccaaatggttgcatatctatcttccgaagtgttaattttatgattcatactacaaaaattagatggtcaaatgtttat |
414 |
Q |
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| T |
36161610 |
tttctcccccaatttgatgtatatttatcttc--aagtgttaattttatgattcatgctacaaaaactagatggtcaattgtttat |
36161527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 550
Target Start/End: Complemental strand, 36161481 - 36161390
Alignment:
| Q |
458 |
ttgtattgaaaattcagcttatcaaatatataaggtagttattgaaaagtgcaaaccaattttgtccaagaacattagaatatagtcaagata |
550 |
Q |
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| T |
36161481 |
ttgtattgaaaatacaacttagcaaatatttaatgtagttactgcaaagtgcaaaccagtaatgtccaataac-gtagaagatagtcaagata |
36161390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 29172431 - 29172509
Alignment:
| Q |
168 |
gagtactaacttaattgttaatgagttgtgaagttgtgattgatttatcaaggatgtaattgaattacacttcattaaa |
246 |
Q |
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| T |
29172431 |
gagtactaacataattgttaatgagttatgaagttgtgattgatttatcaaggttgcgattgaattacactttattaaa |
29172509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 29172337 - 29172411
Alignment:
| Q |
97 |
ttttttgagactaaattgcagcaacaaggtgtcggtttctcacatgttttgtacgcttggaagaataaatagagt |
171 |
Q |
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| T |
29172337 |
tttttttagaccaaattgtagcaacaaggtgttggtttcttacatgttttgtatgtttggaagaatgaatagagt |
29172411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 29172740 - 29172824
Alignment:
| Q |
466 |
aaaattcagcttatcaaatatataaggtagttattgaaaagtgcaaaccaattttgtccaagaacattagaatatagtcaagata |
550 |
Q |
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| T |
29172740 |
aaaattcaacttatcaaacatataaggtaattattgcagagtgctaactaatcttgtcaaaaaacattacaagatagtcaagata |
29172824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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