View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7386_low_6 (Length: 503)
Name: NF7386_low_6
Description: NF7386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7386_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 5826458 - 5826670
Alignment:
| Q |
15 |
taaagaacccatagttgagggacacaatttcttccacgcaattgtttgaagtaaagagctattaatagatacatcgactaactttttaagttggacaaca |
114 |
Q |
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| T |
5826458 |
taaagaacccataattgagggacacaatttcttccacgcaattgtttgaagtaaagagctattaatagatacatcgactaactttttaagttggacaaca |
5826557 |
T |
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| Q |
115 |
ta------nnnnnnnnnnnnaacaaaaagttagacaacaatattttatttactatttatatttgacatcctcatgaaaattgagctagctcgaccactga |
208 |
Q |
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| T |
5826558 |
tattgttttttttttttttttacaaaaagttggacaacaatattttatttactatttatatttgacatcctcctgaaaattgagctagctcgaccactga |
5826657 |
T |
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| Q |
209 |
gtatatgaatagg |
221 |
Q |
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| T |
5826658 |
gtatatgaatagg |
5826670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 420 - 500
Target Start/End: Original strand, 5828105 - 5828185
Alignment:
| Q |
420 |
cgcctccataagtccattagaaacgaggaatttattttacttttaccacttccatttcaacatatagtattatctacccac |
500 |
Q |
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| T |
5828105 |
cgcctccataagtccattagaaacgaggaatttattttacttttaccacttccatttcaacatataatataatatacccac |
5828185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 5827567 - 5827634
Alignment:
| Q |
211 |
atatgaatagggctattgctggatcaaactccatggaggctcaataatcaattcaacgtataaacata |
278 |
Q |
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| T |
5827567 |
atatgaatagggctattgctggatcaaactccatggaggctcaataatcaattcaacgtataaacata |
5827634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 300 - 378
Target Start/End: Original strand, 5827984 - 5828063
Alignment:
| Q |
300 |
attcatgaataacgaatacaactaaaatacatattccttgccaaattttgcagc-ttccaaagtccaaaagcctccacga |
378 |
Q |
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| T |
5827984 |
attcatggataacgaatacaactaaaatacatattccttgccaaattttgcagctttccaaagtccaaacgcctccacga |
5828063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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