View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7386_low_7 (Length: 490)
Name: NF7386_low_7
Description: NF7386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7386_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 214 - 490
Target Start/End: Complemental strand, 45147586 - 45147310
Alignment:
| Q |
214 |
atcttctacctataaaacagtcaatgagtctttggatagaaatgtttatcaaaaagaggcattaaagcaggaaccattcatgacattaacatttttcact |
313 |
Q |
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| T |
45147586 |
atcttctacctataaaacggtcaatgagtctttggatagaaatgtttatcaaaaagaggcattaaagcaggaaccattcatgacattaacatttttcact |
45147487 |
T |
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| Q |
314 |
caacagcaaacaagtaaggacacatttactttctaacaacattttcagtgtacgtgggtagataatatgacatatgattatgaattttctttcttaattg |
413 |
Q |
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| T |
45147486 |
caacagcaaacaagtaaggacacatttactttctaacaacattttcagtgtacgtgggtagataatatgacatatgattatgaattttctttcttaattg |
45147387 |
T |
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| Q |
414 |
tgatagagaaaagattcaagcaaactcgagaaaatacattttcagaattttcattaaaatgcattttcaaaaaattc |
490 |
Q |
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| T |
45147386 |
tgatagagaaaagattcaagcaaactcgagaaaatacattttcagaattttcattaaaatgcattttcaaaaaattc |
45147310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 45147800 - 45147613
Alignment:
| Q |
1 |
tttctgttgtagtcaagcgagaaaatccaacatgagttttagaatgagaagtattgcctacctctttgttccaattggttttgtaaagtatccccgagag |
100 |
Q |
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| T |
45147800 |
tttctgttgtagtcaagcgagaaaatccaacatgagtcttagaatgagaagtattgcctacctctttgttccaattggttttgtaaagtatccccgagag |
45147701 |
T |
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| Q |
101 |
cagcaaggtctggaggagaattccacatatcatacctccccaaagtccctaa-aaaattcagaatcattataaagagttgttcgcttc |
187 |
Q |
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| T |
45147700 |
cagcaaggtctggaggagaattccacatatcatacctccccaaagtccctaaaaaaattcagaatcattagaaagagttgttcgcttc |
45147613 |
T |
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