View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7388_high_1 (Length: 704)

Name: NF7388_high_1
Description: NF7388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7388_high_1
NF7388_high_1
[»] chr2 (14 HSPs)
chr2 (377-691)||(10104938-10105252)
chr2 (377-691)||(10043227-10043538)
chr2 (45-294)||(10043595-10043843)
chr2 (45-294)||(10105309-10105557)
chr2 (603-678)||(10202194-10202269)
chr2 (610-678)||(727318-727386)
chr2 (578-678)||(43691087-43691187)
chr2 (603-678)||(433162-433237)
chr2 (603-678)||(3048566-3048641)
chr2 (603-678)||(39310390-39310465)
chr2 (583-678)||(42133471-42133565)
chr2 (633-678)||(7315790-7315835)
chr2 (610-678)||(18999360-18999428)
chr2 (610-674)||(38463170-38463234)
[»] scaffold0635 (2 HSPs)
scaffold0635 (377-691)||(3532-3843)
scaffold0635 (45-294)||(3227-3475)
[»] chr8 (13 HSPs)
chr8 (578-678)||(31941063-31941163)
chr8 (602-678)||(37953806-37953882)
chr8 (603-678)||(20993561-20993636)
chr8 (603-673)||(3728360-3728430)
chr8 (610-678)||(4312164-4312232)
chr8 (610-678)||(36442337-36442405)
chr8 (610-678)||(44604850-44604918)
chr8 (603-678)||(10096636-10096711)
chr8 (641-678)||(8547159-8547196)
chr8 (578-678)||(25063339-25063439)
chr8 (578-622)||(29845169-29845213)
chr8 (610-678)||(37817407-37817475)
chr8 (610-678)||(42650199-42650267)
[»] chr7 (15 HSPs)
chr7 (603-678)||(24382615-24382690)
chr7 (602-678)||(22752863-22752939)
chr7 (578-678)||(47086329-47086429)
chr7 (603-674)||(32986127-32986198)
chr7 (603-684)||(24829088-24829168)
chr7 (578-678)||(10422478-10422577)
chr7 (578-678)||(42557531-42557630)
chr7 (603-678)||(4227358-4227433)
chr7 (580-678)||(6328202-6328301)
chr7 (581-690)||(38504542-38504649)
chr7 (610-687)||(27396334-27396411)
chr7 (610-678)||(31717328-31717396)
chr7 (603-671)||(40857376-40857444)
chr7 (601-673)||(43188552-43188624)
chr7 (642-678)||(46416612-46416648)
[»] chr5 (13 HSPs)
chr5 (583-678)||(972623-972718)
chr5 (610-678)||(43150187-43150255)
chr5 (603-678)||(1269548-1269623)
chr5 (611-678)||(2025710-2025777)
chr5 (603-678)||(37940942-37941017)
chr5 (602-652)||(21207760-21207810)
chr5 (610-687)||(12707896-12707973)
chr5 (610-687)||(12769145-12769222)
chr5 (577-626)||(42383133-42383182)
chr5 (610-678)||(9902530-9902598)
chr5 (578-678)||(21728660-21728760)
chr5 (578-678)||(25567711-25567811)
chr5 (610-678)||(43070713-43070781)
[»] chr4 (9 HSPs)
chr4 (603-673)||(28187198-28187268)
chr4 (603-678)||(28983756-28983831)
chr4 (603-678)||(41323558-41323633)
chr4 (610-678)||(3084271-3084339)
chr4 (578-678)||(13632089-13632189)
chr4 (610-678)||(25586356-25586424)
chr4 (610-678)||(36526170-36526238)
chr4 (610-678)||(38173399-38173467)
chr4 (579-623)||(38944465-38944509)
[»] chr1 (9 HSPs)
chr1 (578-687)||(45458675-45458784)
chr1 (603-678)||(23809913-23809988)
chr1 (610-678)||(15952861-15952929)
chr1 (603-678)||(36586275-36586350)
chr1 (639-687)||(1576434-1576482)
chr1 (610-678)||(15906196-15906264)
chr1 (639-687)||(40962722-40962770)
chr1 (610-678)||(42631014-42631082)
chr1 (610-678)||(48391987-48392055)
[»] chr3 (13 HSPs)
chr3 (610-678)||(40559705-40559773)
chr3 (603-687)||(45475252-45475336)
chr3 (603-678)||(7552619-7552694)
chr3 (611-678)||(19921341-19921408)
chr3 (602-678)||(12088311-12088387)
chr3 (603-687)||(42683074-42683158)
chr3 (603-678)||(38127871-38127946)
chr3 (578-687)||(47069006-47069115)
chr3 (578-678)||(9583452-9583552)
chr3 (578-678)||(11029663-11029763)
chr3 (610-678)||(24273909-24273977)
chr3 (639-687)||(48191154-48191202)
chr3 (603-687)||(50238860-50238944)
[»] scaffold0515 (1 HSPs)
scaffold0515 (603-678)||(2502-2577)
[»] scaffold0306 (1 HSPs)
scaffold0306 (603-678)||(2502-2577)
[»] chr6 (6 HSPs)
chr6 (583-678)||(9727499-9727594)
chr6 (603-678)||(10531410-10531485)
chr6 (575-622)||(28533437-28533484)
chr6 (610-678)||(4480505-4480573)
chr6 (578-678)||(16496681-16496781)
chr6 (610-678)||(31205212-31205280)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 377 - 691
Target Start/End: Complemental strand, 10105252 - 10104938
Alignment:
Q  377 ggagaaaacatcataaaataattctcttactttcctgccaagcttgcctgcaccactccccatttgttgattatggtcattacataataccttttcaaaa 476  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10105252 ggagaaaacatcataaaataattctcttactttcttgccaagcttgcctgcaccactccccatttgttgattatggtcattacatgataccttttcaaaa 10105153  T
Q  477 ttaataataatattttatttttgttataaaattctgatttcataagtataattattaaggttgatataaattttgttatatgtaaacattgtatggcgtc 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10105152 ttaataataatattttatttttgttataaaattctgatttcataagtataattattaaggttgatataaattttgttatatgtaaacattgtatggcgtc 10105053  T
Q  577 gtccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagt 676  Q
    ||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||  ||||  ||||||||||||||| ||||||||||||||||||||||    
T  10105052 gtccataagtcatagtttaattgtcaaaaatatcgaaattgctaggtcggttgccatgatcggggttcgaactccaactcctccacttatgtgtgtgagt 10104953  T
Q  677 ttccaatggttattg 691  Q
    |||||||||||||||    
T  10104952 ttccaatggttattg 10104938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 377 - 691
Target Start/End: Complemental strand, 10043538 - 10043227
Alignment:
Q  377 ggagaaaacatcataaaataattctcttactttcctgccaagcttgcctgcaccactccccatttgttgattatggtcattacataataccttttcaaaa 476  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10043538 ggagaaaacatcataaaataattctcttactttcttgccaagcttgcctgcaccactccccatttgttgattatggtcattacataataccttttcaaaa 10043439  T
Q  477 ttaataataatattttatttttgttataaaattctgatttcataagtataattattaaggttgatataaattttgttatatgtaaacattgtatggcgtc 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10043438 ttaataataatattttatttttgttataaaattctgatttcataagtataattattaaggttgatataaattttgttatatgtaaacattgtat-gcgtc 10043340  T
Q  577 gtccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagt 676  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||| |  |||  ||||| ||||||||||||||| |||||||||||  | |||||||    
T  10043339 gtccataagtcatagtttaattgtcaaaaatatcgaaattgctaggttgattgccatgattggggttcgaactccaactcctccactta--tttgtgagt 10043242  T
Q  677 ttccaatggttattg 691  Q
    || ||||||||||||    
T  10043241 tttcaatggttattg 10043227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 45 - 294
Target Start/End: Complemental strand, 10043843 - 10043595
Alignment:
Q  45 ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcacttccattctattacataannnnnnnaaaatattcgaacaattgaatatc 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||| |||| |||||||||    
T  10043843 ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcatttccattctattacataatttttt-aaaatattcaaacagttgaatatc 10043745  T
Q  145 acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10043744 acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat 10043645  T
Q  245 tttaacatttatgaaatgagaataaccaaagttgaaagaagcaactctta 294  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10043644 tttaacatttatgaaatgagaataaccaaagttgaaagaagcaattctta 10043595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 45 - 294
Target Start/End: Complemental strand, 10105557 - 10105309
Alignment:
Q  45 ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcacttccattctattacataannnnnnnaaaatattcgaacaattgaatatc 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||| |||| |||||||||    
T  10105557 ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcatttccattctattacataatttttt-aaaatattcaaacagttgaatatc 10105459  T
Q  145 acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10105458 acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat 10105359  T
Q  245 tttaacatttatgaaatgagaataaccaaagttgaaagaagcaactctta 294  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10105358 tttaacatttatgaaatgagaataaccaaagttgaaagaagcaattctta 10105309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 10202194 - 10202269
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||| ||| |||| ||||  ||||||||||| || | ||||||||||| |||||||||||    
T  10202194 aaaatgtcgaaattgttaggccggatgctatgatcggggttcgaacttcagtacctccacttatatgtgtgagttt 10202269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 727386 - 727318
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| |||  ||||  |||||||||||||  | ||||||||| |||||||||||||    
T  727386 cgaaattgttaggtcggatgccatgatcggggttcgaactccggtacctccacttgtgtgtgtgagttt 727318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 678
Target Start/End: Original strand, 43691087 - 43691187
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||| |||||||||||||| || |||||||  ||||||| ||| ||| | |||| ||||    ||||||||||| || ||||||||||||| ||||||||    
T  43691087 tccacaagtcttagttcaactgacaaaaatgccgaaattattaagtcagatgctatgatcgatgttcgaactccgatacctccacttatgtatgtgagtt 43691186  T
Q  678 t 678  Q
    |    
T  43691187 t 43691187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 433162 - 433237
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| ||||||||||||||  || ||| ||||||   |||||||| || |||||||||||| |||||||||||||    
T  433162 aaaatgtcgaaattgttaggctggatgccgtgattgaagttcgaaccccgattcctccacttgtgtgtgtgagttt 433237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 3048566 - 3048641
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||| ||| |||  ||||  |||||||||| ||  | |||||||||||||||||||||||    
T  3048566 aaaatgtcgaaattgttaggccggatgccatgatcggggttcgaaccccggtacctccacttatgtgtgtgagttt 3048641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 39310390 - 39310465
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||||||||||||||||| ||| || | ||||  |||||||||||||  |  |||||||| |||||||||||||    
T  39310390 aaaatatcgaaattgttaggccggatgttatgatcggggttcgaactccggtaactccacttgtgtgtgtgagttt 39310465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 678
Target Start/End: Complemental strand, 42133565 - 42133471
Alignment:
Q  583 aagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||||||||||| || ||||| |  ||||||||||||||||| |||  ||| |||||||||||  || || ||||||||| ||| |||||||||    
T  42133565 aagtcttagttcaactggcaaaa-tgccgaaattgttaggtcggatgccatgactagggttcgaatcccgatacctccacttgtgtttgtgagttt 42133471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 678
Target Start/End: Complemental strand, 7315835 - 7315790
Alignment:
Q  633 tgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||  | |||||||||||||||||||||||    
T  7315835 tgattggggttcgaactccggtacctccacttatgtgtgtgagttt 7315790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 18999360 - 18999428
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| |||  | ||| | |||||||| ||  ||||||||||| |||||||||||||    
T  18999360 cgaaattgttaggtcggatgccattattggagttcgaaccccggttcctccacttgtgtgtgtgagttt 18999428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 674
Target Start/End: Original strand, 38463170 - 38463234
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtga 674  Q
    ||||||||||||||||| || | ||||  |||||||||| || || ||||||||| |||||||||    
T  38463170 cgaaattgttaggtcggatgttatgatcggggttcgaaccccgatacctccacttgtgtgtgtga 38463234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 377 - 691
Target Start/End: Original strand, 3532 - 3843
Alignment:
Q  377 ggagaaaacatcataaaataattctcttactttcctgccaagcttgcctgcaccactccccatttgttgattatggtcattacataataccttttcaaaa 476  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3532 ggagaaaacatcataaaataattctcttactttcttgccaagcttgcctgcaccactccccatttgttgattatggtcattacataataccttttcaaaa 3631  T
Q  477 ttaataataatattttatttttgttataaaattctgatttcataagtataattattaaggttgatataaattttgttatatgtaaacattgtatggcgtc 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3632 ttaataataatattttatttttgttataaaattctgatttcataagtataattattaaggttgatataaattttgttatatgtaaacattgtat-gcgtc 3730  T
Q  577 gtccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagt 676  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||| |  |||  ||||| ||||||||||||||| |||||||||||  | |||||||    
T  3731 gtccataagtcatagtttaattgtcaaaaatatcgaaattgctaggttgattgccatgattggggttcgaactccaactcctccactta--tttgtgagt 3828  T
Q  677 ttccaatggttattg 691  Q
    || ||||||||||||    
T  3829 tttcaatggttattg 3843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 45 - 294
Target Start/End: Original strand, 3227 - 3475
Alignment:
Q  45 ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcacttccattctattacataannnnnnnaaaatattcgaacaattgaatatc 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||| |||| |||||||||    
T  3227 ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcatttccattctattacataatttttt-aaaatattcaaacagttgaatatc 3325  T
Q  145 acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3326 acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat 3425  T
Q  245 tttaacatttatgaaatgagaataaccaaagttgaaagaagcaactctta 294  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3426 tttaacatttatgaaatgagaataaccaaagttgaaagaagcaattctta 3475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 578 - 678
Target Start/End: Complemental strand, 31941163 - 31941063
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||| ||||||||||||||||| |||||||  |||||||||||||  || ||   ||||  |||||||||| || || ||||||||||||||||||||||    
T  31941163 tccagaagtcttagttcaattggcaaaaatgccgaaattgttaggctggatgtcatgatcggggttcgaaccccgatacctccacttatgtgtgtgagtt 31941064  T
Q  678 t 678  Q
    |    
T  31941063 t 31941063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 602 - 678
Target Start/End: Original strand, 37953806 - 37953882
Alignment:
Q  602 aaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||| |||||||||||||| ||| |||| |||||  ||||||||| || || ||||||||||| |||||||||||    
T  37953806 aaaaatgtcgaaattgttaggccggatgctatgattgtggttcgaaccccgatacctccacttatatgtgtgagttt 37953882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 20993561 - 20993636
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||| ||| |||| ||||  |||||||||| ||  | |||||||||||||||||||||||    
T  20993561 aaaatgtcgaaattgttaggccggatgctatgatcggggttcgaaccccggtacctccacttatgtgtgtgagttt 20993636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 673
Target Start/End: Complemental strand, 3728430 - 3728360
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtg 673  Q
    |||||||||||||||||||||||| ||   ||||| |||||||||| || || ||||||||| ||||||||    
T  3728430 aaaatatcgaaattgttaggtcggatgtcatgattggggttcgaaccccgatacctccacttgtgtgtgtg 3728360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 4312164 - 4312232
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| |||  ||| | |||||||||||||  | ||||||||| |||||||||||||    
T  4312164 cgaaattgttaggtcggatgccatgactggggttcgaactccggtacctccacttgtgtgtgtgagttt 4312232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 36442337 - 36442405
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| ||   ||||| |||||||||||||  | ||||||||| |||||||||||||    
T  36442337 cgaaattgttaggtcggatgtcatgattggggttcgaactccggtacctccacttgtgtgtgtgagttt 36442405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 44604918 - 44604850
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| |||  ||||  |||||||||| ||  | |||||||||||||||||||||||    
T  44604918 cgaaattgttaggtcggatgccatgatcggggttcgaaccccggtacctccacttatgtgtgtgagttt 44604850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 10096636 - 10096711
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||| ||| |||  |||   |||||||||| || || |||||||||||||||||||||||    
T  10096636 aaaatgtcgaaattgttaggccggatgccatgaccggggttcgaaccccgatacctccacttatgtgtgtgagttt 10096711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 678
Target Start/End: Complemental strand, 8547196 - 8547159
Alignment:
Q  641 gttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||| || |||||||||||||||||||||||    
T  8547196 gttcgaactccgatacctccacttatgtgtgtgagttt 8547159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 678
Target Start/End: Original strand, 25063339 - 25063439
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||| ||||| |||||||| || |||||||  ||||||||||||| ||| |||  |||   |||||||||| ||  | ||||||||| ||||||||||||    
T  25063339 tccagaagtcctagttcaactggcaaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctccacttgtgtgtgtgagtt 25063438  T
Q  678 t 678  Q
    |    
T  25063439 t 25063439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 622
Target Start/End: Complemental strand, 29845213 - 29845169
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttagg 622  Q
    |||| ||||| |||||||| || ||||||||||||||||||||||    
T  29845213 tccagaagtcctagttcaactggcaaaaatatcgaaattgttagg 29845169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 37817407 - 37817475
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| |||  |||   |||||||||| || || ||||||||| |||||||||||||    
T  37817407 cgaaattgttaggtcggatgccatgaccggggttcgaaccccgatacctccacttgtgtgtgtgagttt 37817475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 42650199 - 42650267
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| |||  ||||| ||||||||||  |  | ||||||||||||||| |||||||    
T  42650199 cgaaattgttaggtcggatgccatgattggggttcgaacctcggtacctccacttatgtgtatgagttt 42650267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 24382615 - 24382690
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||| ||||||||||||||||| |||| ||||| |||||||||||||  | ||||||||| ||||| |||||||    
T  24382615 aaaataccgaaattgttaggtcggatgctatgattggggttcgaactccgttacctccacttgtgtgtatgagttt 24382690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 602 - 678
Target Start/End: Complemental strand, 22752939 - 22752863
Alignment:
Q  602 aaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| ||| ||| |||| ||||  |||||||||| ||| | ||||||||||||||| |||||||    
T  22752939 aaaaatatcgaaattgtaaggccggatgctatgatcggggttcgaaccccagtacctccacttatgtgtatgagttt 22752863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 678
Target Start/End: Complemental strand, 47086429 - 47086329
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||||||||| ||| |||| || ||||||| |||||||||||||| ||| |||  ||||  |||||||||| |   | ||||||||||||||||||||||    
T  47086429 tccataagtcctagctcaactgacaaaaatgtcgaaattgttaggccggatgccatgatcggggttcgaaccctgttacctccacttatgtgtgtgagtt 47086330  T
Q  678 t 678  Q
    |    
T  47086329 t 47086329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 674
Target Start/End: Original strand, 32986127 - 32986198
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtga 674  Q
    |||||||||||||||||||| ||| |||| ||||| ||||||||||  |  |||||| ||||||||||||||    
T  32986127 aaaatatcgaaattgttagggcggatgctatgattggggttcgaacctcggttcctctacttatgtgtgtga 32986198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 684
Target Start/End: Complemental strand, 24829168 - 24829088
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtttccaatg 684  Q
    ||||| |||||||||||||||||| |||  ||||  |||||||||||||| |  || ||||||||||||||||||| |||||    
T  24829168 aaaatgtcgaaattgttaggtcggatgca-tgatcggggttcgaactccagtatcttcacttatgtgtgtgagtttacaatg 24829088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 678
Target Start/End: Original strand, 10422478 - 10422577
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||| ||||||||| |||| || ||||| |||||||||||||||||||| |||  ||||  |||||||||  ||  | ||||||||| ||||||||||||    
T  10422478 tccagaagtcttagctcaactggcaaaa-tatcgaaattgttaggtcggatgccatgatcggggttcgaatcccggtacctccacttgtgtgtgtgagtt 10422576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 678
Target Start/End: Complemental strand, 42557630 - 42557531
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||||||||| ||| ||||||| ||||| |  ||||||||||||| ||| |||  ||||  ||||| |||||||  | ||||||||||||||||||||||    
T  42557630 tccataagtcctagctcaattggcaaaa-tgccgaaattgttaggccggatgccatgatcggggtttgaactccggtacctccacttatgtgtgtgagtt 42557532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 4227358 - 4227433
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||| ||||||||||||||||| |||  ||||  |||||||||| ||  | ||||||||| |||||||||||||    
T  4227358 aaaataccgaaattgttaggtcggatgccatgatcggggttcgaaccccggtacctccacttgtgtgtgtgagttt 4227433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 678
Target Start/End: Complemental strand, 6328301 - 6328202
Alignment:
Q  580 cataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccac-ttatgtgtgtgagttt 678  Q
    |||||||||||| |||| || ||||||| || |||||||||||| ||  |   ||| |||||||||||| || || ||||||| ||||||||||||||||    
T  6328301 cataagtcttagctcaactggcaaaaatgtcaaaattgttaggttggacgtcatgactagggttcgaaccccgatacctccactttatgtgtgtgagttt 6328202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 690
Target Start/End: Complemental strand, 38504649 - 38504542
Alignment:
Q  581 ataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtttcc 680  Q
    ||||||| ||| ||||||| |||||||  ||||||| ||||| |||  |||||||  |||||| |||| ||   ||||||||||  ||||||||||||||    
T  38504649 ataagtcctagctcaattggcaaaaatgccgaaatttttaggccggacgctgtgacaagggtttgaaccccggctcctccactt--gtgtgtgagtttcc 38504552  T
Q  681 aatggttatt 690  Q
    ||||| ||||    
T  38504551 aatggctatt 38504542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 687
Target Start/End: Complemental strand, 27396411 - 27396334
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtttccaatggtt 687  Q
    ||||||||||||| ||| |||  ||||| |||||||||| ||  | ||||||||| |||||||||||||  |||||||    
T  27396411 cgaaattgttaggccggatgccatgattggggttcgaaccccggtacctccacttgtgtgtgtgagtttataatggtt 27396334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 31717328 - 31717396
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| ||| |||  |||   |||||||||||||  | |||||||||||||||||||||||    
T  31717328 cgaaattgttaggccggatgccatgaccggggttcgaactccggtacctccacttatgtgtgtgagttt 31717396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 603 - 671
Target Start/End: Complemental strand, 40857444 - 40857376
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtg 671  Q
    ||||| |||||||||||||||||| |||  ||||  |||||||||| ||  | ||||||||||||||||    
T  40857444 aaaatgtcgaaattgttaggtcggatgccatgatcggggttcgaaccccggtacctccacttatgtgtg 40857376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 673
Target Start/End: Original strand, 43188552 - 43188624
Alignment:
Q  601 caaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtg 673  Q
    |||||||  ||||||||||||| ||  |||  ||| |||||||||||| ||||| ||||||||| ||||||||    
T  43188552 caaaaatgccgaaattgttaggccgcatgccatgactagggttcgaaccccaatacctccacttgtgtgtgtg 43188624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 642 - 678
Target Start/End: Original strand, 46416612 - 46416648
Alignment:
Q  642 ttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||||||| || |||||||||||||||||||||||    
T  46416612 ttcgaactccgatacctccacttatgtgtgtgagttt 46416648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 678
Target Start/End: Complemental strand, 972718 - 972623
Alignment:
Q  583 aagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||| || ||||||| |||||||||||||||||| |||| |||  ||||||||||| ||  | |||| |||| |||||||||||||    
T  972718 aagtcctagttcaactgacaaaaatgtcgaaattgttaggtcggatgctatgaccagggttcgaaccccggtacctctacttgtgtgtgtgagttt 972623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 43150255 - 43150187
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| ||| |||| ||||| |||||||||| ||  | ||||||||| |||||||||||||    
T  43150255 cgaaattgttaggccggatgctatgattggggttcgaaccccggtacctccacttgtgtgtgtgagttt 43150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Complemental strand, 1269623 - 1269548
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||| ||| |||  ||||| |||||||||| ||  | ||||||||||| |||||||||||    
T  1269623 aaaatgtcgaaattgttaggccggatgccatgattggggttcgaaccccggtacctccacttatttgtgtgagttt 1269548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 678
Target Start/End: Complemental strand, 2025777 - 2025710
Alignment:
Q  611 gaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||||||||||||| ||   ||||  |||||||||||||  | |||||||||||||||||||||||    
T  2025777 gaaattgttaggtcggatgtcatgatcggggttcgaactccggtacctccacttatgtgtgtgagttt 2025710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 37940942 - 37941017
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||| ||| |||  ||||  |||||||||| || || ||||||||| |||||||||||||    
T  37940942 aaaatgtcgaaattgttaggccggatgccatgatcggggttcgaaccccgatacctccacttgtgtgtgtgagttt 37941017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 652
Target Start/End: Complemental strand, 21207810 - 21207760
Alignment:
Q  602 aaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactcca 652  Q
    |||||||||||||||||||||| || || ||| ||| ||||||||||||||    
T  21207810 aaaaatatcgaaattgttaggttggatgttgtaattggggttcgaactcca 21207760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 687
Target Start/End: Complemental strand, 12707973 - 12707896
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtttccaatggtt 687  Q
    ||||||||||||||||| |||  | |  || |||||||| ||||| ||||||||| |||||||||||||  |||||||    
T  12707973 cgaaattgttaggtcggatgccatcaccagagttcgaaccccaatacctccacttgtgtgtgtgagtttataatggtt 12707896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 687
Target Start/End: Complemental strand, 12769222 - 12769145
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtttccaatggtt 687  Q
    ||||||||||||||||| |||  | |  || |||||||| ||||| ||||||||| |||||||||||||  |||||||    
T  12769222 cgaaattgttaggtcggatgccatcaccagagttcgaaccccaatacctccacttgtgtgtgtgagtttataatggtt 12769145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 626
Target Start/End: Complemental strand, 42383182 - 42383133
Alignment:
Q  577 gtccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcgg 626  Q
    ||||||| ||| ||||||||||| |||||||  |||||||||||||||||    
T  42383182 gtccatatgtcctagttcaattggcaaaaatgccgaaattgttaggtcgg 42383133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 9902598 - 9902530
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| ||| |||| ||||  |||||||||| ||  | ||||||||| |||||||||||||    
T  9902598 cgaaattgttaggccggatgctatgatcggggttcgaaccccggtacctccacttgtgtgtgtgagttt 9902530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 678
Target Start/End: Original strand, 21728660 - 21728760
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||| ||||| ||| |||| || |||||||  ||||||||||||| ||| |||  |||   |||||||||| ||  | ||||||||||||||||||||||    
T  21728660 tccagaagtcctagctcaactggcaaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtgcctccacttatgtgtgtgagtt 21728759  T
Q  678 t 678  Q
    |    
T  21728760 t 21728760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 678
Target Start/End: Complemental strand, 25567811 - 25567711
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||||||||| |||||||| || |||||||   |||||| ||||| ||| |||  ||||  |||||||||| ||  | ||||||||| ||||||||||||    
T  25567811 tccataagtcctagttcaactggcaaaaatgctgaaattattaggccggatgccatgatcggggttcgaaccccgttacctccacttctgtgtgtgagtt 25567712  T
Q  678 t 678  Q
    |    
T  25567711 t 25567711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 43070781 - 43070713
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| |||  |||    ||||||||| ||  |||||||||||||||||||||||||    
T  43070781 cgaaattgttaggtcggatgccatgacggaggttcgaaccccggttcctccacttatgtgtgtgagttt 43070713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 673
Target Start/End: Complemental strand, 28187268 - 28187198
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtg 673  Q
    ||||| |||||||||||||| ||| |||| ||||  |||||||||||||| | ||||||||||||||||||    
T  28187268 aaaatgtcgaaattgttaggccggatgctatgatcggggttcgaactccagtacctccacttatgtgtgtg 28187198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 28983756 - 28983831
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||| ||||||||||||| |||  |||   |||||||||||||  | |||||||||||||||||||||||    
T  28983756 aaaatgtcgacattgttaggtcggatgccatgaccggggttcgaactccggtacctccacttatgtgtgtgagttt 28983831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 41323558 - 41323633
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| ||||||||||||| |||| |||| ||||| |||||||||| ||  | ||| ||||| |||||||||||||    
T  41323558 aaaatgtcgaaattgttagatcggatgctatgattggggttcgaaccccggtaccttcacttctgtgtgtgagttt 41323633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 3084339 - 3084271
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| |||  ||||  |||||||||  || || ||||||||| |||||||||||||    
T  3084339 cgaaattgttaggtcggatgccatgatcggggttcgaatcccgatacctccacttgtgtgtgtgagttt 3084271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 678
Target Start/End: Original strand, 13632089 - 13632189
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||| ||||| ||| |||| || ||||||| |||||||||||||| ||| |||  |||    ||||||||| ||| | ||||||||| ||||||||||||    
T  13632089 tccagaagtcctagctcaactggcaaaaatgtcgaaattgttaggccggatgccatgaccgaggttcgaaccccagtacctccacttgtgtgtgtgagtt 13632188  T
Q  678 t 678  Q
    |    
T  13632189 t 13632189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 25586424 - 25586356
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| ||| |||  ||||  |||||||||| ||  | |||||||||||||||||||||||    
T  25586424 cgaaattgttaggccggatgccatgatcggggttcgaaccccggtacctccacttatgtgtgtgagttt 25586356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 36526238 - 36526170
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| ||| |||  ||||| |||||||||| ||  | ||||||||| |||||||||||||    
T  36526238 cgaaattgttaggccggatgccatgattggggttcgaaccccggtacctccacttgtgtgtgtgagttt 36526170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 38173467 - 38173399
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| || ||||||| | |||||||  ||  | ||||||||| |||||||||||||    
T  38173467 cgaaattgttaggtcggatgttgtgattggagttcgaatcccggtgcctccacttgtgtgtgtgagttt 38173399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 579 - 623
Target Start/End: Complemental strand, 38944509 - 38944465
Alignment:
Q  579 ccataagtcttagttcaattgtcaaaaatatcgaaattgttaggt 623  Q
    ||||||||| |||||||| |  |||||||||||||||||||||||    
T  38944509 ccataagtcgtagttcaactagcaaaaatatcgaaattgttaggt 38944465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 578 - 687
Target Start/End: Complemental strand, 45458784 - 45458675
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||||||||| ||||| ||||| |||||||| ||||||| ||| | ||| |||| |||   |||||||||| || || |||||| ||||||||||| |||    
T  45458784 tccataagtcctagtttaattggcaaaaataccgaaatttttaagccggatgctatgacaggggttcgaaccccgatacctccatttatgtgtgtgggtt 45458685  T
Q  678 tccaatggtt 687  Q
    | ||||||||    
T  45458684 tacaatggtt 45458675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 678
Target Start/End: Complemental strand, 23809988 - 23809913
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||||||||||||||||| ||| ||   ||||  | ||||||||||| || |||||||||||||||||||||||    
T  23809988 aaaatatcgaaattgttaggccggatgtcatgatcggagttcgaactccgatacctccacttatgtgtgtgagttt 23809913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 15952929 - 15952861
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| || | ||||  |||||||||||||  | ||||||||| |||||||||||||    
T  15952929 cgaaattgttaggtcggatgttatgatcggggttcgaactccggtacctccacttgtgtgtgtgagttt 15952861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 36586275 - 36586350
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||| ||| ||| |||||  |||||||||| ||  | ||||||||| |||||||||||||    
T  36586275 aaaatgtcgaaattgttaggccggatgccgtgatcggggttcgaaccccggtacctccacttgtgtgtgtgagttt 36586350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 687
Target Start/End: Original strand, 1576434 - 1576482
Alignment:
Q  639 gggttcgaactccaattcctccacttatgtgtgtgagtttccaatggtt 687  Q
    |||||||||||||  | |||||||||||||||||||||||  |||||||    
T  1576434 gggttcgaactccgttacctccacttatgtgtgtgagtttataatggtt 1576482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 15906264 - 15906196
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| | | |||  |||| ||||||||||| ||  | |||||||||||||||||||||||    
T  15906264 cgaaattgttaggccagatgccatgatcagggttcgaaccccggtacctccacttatgtgtgtgagttt 15906196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 687
Target Start/End: Complemental strand, 40962770 - 40962722
Alignment:
Q  639 gggttcgaactccaattcctccacttatgtgtgtgagtttccaatggtt 687  Q
    |||||||||| || || |||||||||||||||||||||||  |||||||    
T  40962770 gggttcgaaccccgatacctccacttatgtgtgtgagtttataatggtt 40962722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 42631082 - 42631014
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| ||| |||  ||||  |||||||||| || || ||||||||| |||||||||||||    
T  42631082 cgaaattgttaggccggatgccatgatcggggttcgaaccccgatacctccacttgtgtgtgtgagttt 42631014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 48391987 - 48392055
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| ||| |||  |||  ||||||||||| ||  | |||||||||||||||||||||||    
T  48391987 cgaaattgttaggccggatgccatgaccagggttcgaaccccggtacctccacttatgtgtgtgagttt 48392055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 40559705 - 40559773
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||||||| |||  ||||  ||||||||||||| || ||||||||| |||||||||||||    
T  40559705 cgaaattgttaggtcggatgccttgatcggggttcgaactccgatacctccacttgtgtgtgtgagttt 40559773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 687
Target Start/End: Complemental strand, 45475336 - 45475252
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtttccaatggtt 687  Q
    |||||| ||||||||||||| ||| || | ||||| |||||||||| || || ||||||||| |||||||||||||  |||||||    
T  45475336 aaaataccgaaattgttaggccggatgttatgattggggttcgaaccccgatacctccacttgtgtgtgtgagtttataatggtt 45475252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 7552619 - 7552694
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||| ||||||||||||| ||| ||| ||||   |||||||||| ||||| ||||||||| |||||||||||||    
T  7552619 aaaataccgaaattgttaggccggatgccgtgaccggggttcgaaccccaatacctccacttgtgtgtgtgagttt 7552694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 611 - 678
Target Start/End: Complemental strand, 19921408 - 19921341
Alignment:
Q  611 gaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||||||||||||| |||  ||| |  ||||||||| ||| |||||||||||||||||||||||||    
T  19921408 gaaattgttaggtcggatgccatgactgaggttcgaaccccagttcctccacttatgtgtgtgagttt 19921341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 678
Target Start/End: Complemental strand, 12088387 - 12088311
Alignment:
Q  602 aaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||| |||||||||||||| ||| |||| ||||  |||||||||| ||  | ||||||||| |||||||||||||    
T  12088387 aaaaatgtcgaaattgttaggccggatgctatgatcggggttcgaaccccggtacctccacttgtgtgtgtgagttt 12088311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 687
Target Start/End: Complemental strand, 42683158 - 42683074
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtttccaatggtt 687  Q
    |||||||||||||||||  | ||| | || |||| ||||||||||| || || | |||||||||||||||||||||  |||||||    
T  42683158 aaaatatcgaaattgttgagccggattctatgatcagggttcgaaccccgatacttccacttatgtgtgtgagtttataatggtt 42683074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Complemental strand, 38127946 - 38127871
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||| ||| |||| |||   |||||||||| ||  ||||||||||| |||||||||||||    
T  38127946 aaaatgtcgaaattgttaggccggatgctatgaccggggttcgaaccccggttcctccacttgtgtgtgtgagttt 38127871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 687
Target Start/End: Original strand, 47069006 - 47069115
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||| ||||||||| |||| || |||||||  ||||||||||||| ||| |||  |||   |||||||||| ||  | ||||||||| ||||||||||||    
T  47069006 tccagaagtcttagctcaactggcaaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctccacttgtgtgtgtgagtt 47069105  T
Q  678 tccaatggtt 687  Q
    |  |||||||    
T  47069106 tataatggtt 47069115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 678
Target Start/End: Complemental strand, 9583552 - 9583452
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||| ||| ||||| |||| || |||||||  ||||||||||||| ||| |||| |||   ||||| |||| || || ||||||||| ||||||||||||    
T  9583552 tccagaagccttagctcaactggcaaaaatgccgaaattgttaggccggatgctatgaccggggttagaaccccgatacctccacttgtgtgtgtgagtt 9583453  T
Q  678 t 678  Q
    |    
T  9583452 t 9583452  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 678
Target Start/End: Original strand, 11029663 - 11029763
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||| ||||| ||| |||| || ||||||| ||||||||||||||  || |||  |||  ||||||||||| ||  | ||||||||| ||||||||||||    
T  11029663 tccagaagtcctagctcaactggcaaaaatgtcgaaattgttaggctggatgccatgaccagggttcgaaccccggtacctccacttgtgtgtgtgagtt 11029762  T
Q  678 t 678  Q
    |    
T  11029763 t 11029763  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 24273977 - 24273909
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| ||| |||  ||| ||||||||||||| |  | ||||||||| |||||||||||||    
T  24273977 cgaaattgttaggccggatgccatgactagggttcgaacttcggtacctccacttgtgtgtgtgagttt 24273909  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 687
Target Start/End: Original strand, 48191154 - 48191202
Alignment:
Q  639 gggttcgaactccaattcctccacttatgtgtgtgagtttccaatggtt 687  Q
    |||||||||||||| | ||||||||| |||||||||||||  |||||||    
T  48191154 gggttcgaactccagtacctccacttgtgtgtgtgagtttataatggtt 48191202  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 603 - 687
Target Start/End: Complemental strand, 50238944 - 50238860
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtttccaatggtt 687  Q
    ||||| |||||||||||||| ||| |||  ||||  | |||||||||||  | ||||||||| |||||||||||||  |||||||    
T  50238944 aaaatgtcgaaattgttaggccggatgccatgatcggagttcgaactccggtacctccacttgtgtgtgtgagtttataatggtt 50238860  T

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Target: scaffold0515 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 2502 - 2577
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||| ||| |||| |||   |||||||||| ||  | |||||||||||||||||||||||    
T  2502 aaaatgtcgaaattgttaggccggatgctatgaccggggttcgaaccccggtacctccacttatgtgtgtgagttt 2577  T

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Target: scaffold0306 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 2502 - 2577
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||||||||| ||| |||| |||   |||||||||| ||  | |||||||||||||||||||||||    
T  2502 aaaatgtcgaaattgttaggccggatgctatgaccggggttcgaaccccggtacctccacttatgtgtgtgagttt 2577  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 678
Target Start/End: Original strand, 9727499 - 9727594
Alignment:
Q  583 aagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||| |||||||| || ||||||| |||||||||||||| ||| | |  ||||  |||||||||| ||  | ||||||||| |||||||||||||    
T  9727499 aagtcctagttcaactgacaaaaatgtcgaaattgttaggccggataccatgatcggggttcgaacccctgtacctccacttgtgtgtgtgagttt 9727594  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 10531410 - 10531485
Alignment:
Q  603 aaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    |||||||||||||||||||| ||| |||| ||||  |||||||||| ||  | ||||||||| | |||||||||||    
T  10531410 aaaatatcgaaattgttaggccggatgctatgatcggggttcgaaccccggtacctccacttttatgtgtgagttt 10531485  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 622
Target Start/End: Original strand, 28533437 - 28533484
Alignment:
Q  575 tcgtccataagtcttagttcaattgtcaaaaatatcgaaattgttagg 622  Q
    ||||||||||||| ||||||||||| |||||||  |||||||||||||    
T  28533437 tcgtccataagtcctagttcaattggcaaaaatgccgaaattgttagg 28533484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 4480505 - 4480573
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| ||| |||  ||||| |||||||||| ||  | ||||||||| |||||||||||||    
T  4480505 cgaaattgttaggccggatgccatgattggggttcgaaccccgttacctccacttgtgtgtgtgagttt 4480573  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 678
Target Start/End: Complemental strand, 16496781 - 16496681
Alignment:
Q  578 tccataagtcttagttcaattgtcaaaaatatcgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagtt 677  Q
    |||| ||||| ||| |||| || |||||||  ||||||||||||| ||| |||  |||   |||||||||| ||  | ||||||||||||||||||||||    
T  16496781 tccagaagtcctagctcaactggcaaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtgcctccacttatgtgtgtgagtt 16496682  T
Q  678 t 678  Q
    |    
T  16496681 t 16496681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 31205280 - 31205212
Alignment:
Q  610 cgaaattgttaggtcggctgctgtgattagggttcgaactccaattcctccacttatgtgtgtgagttt 678  Q
    ||||||||||||| ||| |||  ||||  |||||||||| ||| | ||||||||| |||||||||||||    
T  31205280 cgaaattgttaggccggatgccatgatcggggttcgaaccccagtacctccacttgtgtgtgtgagttt 31205212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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