View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7388_high_3 (Length: 577)
Name: NF7388_high_3
Description: NF7388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7388_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Original strand, 5391041 - 5391584
Alignment:
| Q |
19 |
tcattctctgcgttaggatccactgcaccccaaatatgttgttcggctattaaattagcatctgaagcagtagaataacactcccatgcaccttttgagc |
118 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
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| T |
5391041 |
tcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcaccttttgagc |
5391140 |
T |
|
| Q |
119 |
caggaaaccttaatggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgttccaatgacgttcatcatgctgtaaggtgaaaatccaaagat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5391141 |
caggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
5391240 |
T |
|
| Q |
219 |
aacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataatagt---gtatgttgtgac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5391241 |
aacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataatagtagtgtatgttgtgac |
5391340 |
T |
|
| Q |
316 |
gtattttattgacaataatttgtttgtttagtttaatttaccaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391341 |
gtattttattgacaataatttgtttgtttagtttaatttaccaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgt |
5391440 |
T |
|
| Q |
416 |
ggcacatcctccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgac |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
5391441 |
ggcacatcctccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtttgaagggacacatgac |
5391540 |
T |
|
| Q |
516 |
aaagattcagagtatttgggatgagggctcgaaggacgttcctt |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5391541 |
aaagattcagagtatttgggatgagggctcgaaggacgttcctt |
5391584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 5394579 - 5394869
Alignment:
| Q |
19 |
tcattctctgcgttaggatccactgcaccccaaatatgttgttcggctattaaattagcatctgaagcagtagaataacactcccatgcaccttttgagc |
118 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5394579 |
tcattctttgcgttaggatccgctgcaccccaaatatgttgttcggctattaaattagcatctgaagcagtagaataacactcccatgcaccttttgagc |
5394678 |
T |
|
| Q |
119 |
caggaaaccttaatggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgttccaatgacgttcatcatgctgtaaggtgaaaatccaaagat |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
5394679 |
caggaaaccttaaaggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgtgccaatgacgttcatcatgctataaggtgaaaatccaaagat |
5394778 |
T |
|
| Q |
219 |
aacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataatagtgtatgt |
309 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| ||||||| |
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|
| T |
5394779 |
ggggtgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaacaaatatattgttcatttaattatataataatgtatgt |
5394869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 5399760 - 5400017
Alignment:
| Q |
19 |
tcattctctgcgttaggatccactgcaccccaaatatgttgttcggctattaaattagcatctgaagcagtagaataacactcccatgcaccttttgagc |
118 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
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|
| T |
5399760 |
tcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcaccttttgagc |
5399859 |
T |
|
| Q |
119 |
caggaaaccttaatggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgttccaatgacgttcatcatgctgtaaggtgaaaatccaaagat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5399860 |
caggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
5399959 |
T |
|
| Q |
219 |
aacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5399960 |
aacttgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaataaaa |
5400017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 355 - 559
Target Start/End: Original strand, 5395191 - 5395395
Alignment:
| Q |
355 |
accaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatc |
454 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
5395191 |
accaacctcttctaacaagatatcctcctgtgtgtaatagaaattgggtgtgacaaggcgtggcacatcctccgtgaagggggactcatgggccttgatc |
5395290 |
T |
|
| Q |
455 |
ttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgt |
554 |
Q |
| |
|
||||||| |||| |||||||| | ||||||||| |||| || |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5395291 |
ttaccgatcgtttcgaaggatcctaggtagtgcttagttcctgtttgaagggacacatggcaaagattgagagtatttgggatgagggctcgaaggacgt |
5395390 |
T |
|
| Q |
555 |
tcctt |
559 |
Q |
| |
|
||||| |
|
|
| T |
5395391 |
tcctt |
5395395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 358 - 558
Target Start/End: Original strand, 5401341 - 5401541
Alignment:
| Q |
358 |
aacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatctta |
457 |
Q |
| |
|
||||||||| | ||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| || ||||||||| |
|
|
| T |
5401341 |
aacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgaggcgtggcacatcctctgtgaagggggactcatgaggtttgatctta |
5401440 |
T |
|
| Q |
458 |
ccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgttcc |
557 |
Q |
| |
|
|||| ||||| |||| ||| | ||||||||| || |||||||| || ||||| ||||||| ||| ||||||||| |||||| |||||||||||| |
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|
| T |
5401441 |
ccgatgatttcgaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcc |
5401540 |
T |
|
| Q |
558 |
t |
558 |
Q |
| |
|
| |
|
|
| T |
5401541 |
t |
5401541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 3819018 - 3819103
Alignment:
| Q |
133 |
ggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgttccaatgacgttcatcatgctgtaaggtgaaaatccaaagat |
218 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
3819018 |
ggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
3819103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 47338859 - 47338774
Alignment:
| Q |
133 |
ggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgttccaatgacgttcatcatgctgtaaggtgaaaatccaaagat |
218 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
47338859 |
ggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
47338774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 229
Target Start/End: Complemental strand, 47347429 - 47347233
Alignment:
| Q |
33 |
aggatccactgcaccccaaatatgttgttcggctattaaattagcatctgaagcagtagaataacactcccatgcaccttttgagccaggaaaccttaat |
132 |
Q |
| |
|
|||||||||||| ||||||||||||| || || || |||| ||||| ||||| ||||||| ||||||| || || |||| || ||||| | || |
|
|
| T |
47347429 |
aggatccactgcggcccaaatatgttgctctgcaatcaaatccgcatcagaagccacagaataagactcccaagctccctttgtaccgggaaatttcaac |
47347330 |
T |
|
| Q |
133 |
ggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgttccaatgacgttcatcatgctgtaaggtgaaaatccaaagataacttgtggtc |
229 |
Q |
| |
|
|||| ||| || |||||||||||||| || ||||||||||| || |||| || ||||||| || ||||||||||||||||| |||||||| |||| |
|
|
| T |
47347329 |
ggaacaccttcgtgcttgcaaattgcagcataaacacaaagtgtaccaacgagattcatcaaactataaggtgaaaatccaaatataacttgaggtc |
47347233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 47349859 - 47349783
Alignment:
| Q |
142 |
tcatgcttgcaaattgcggcgtaaacacaaagcgttccaatgacgttcatcatgctgtaaggtgaaaatccaaagat |
218 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| |||| || ||||||| ||||||||||| ||||||||||| |
|
|
| T |
47349859 |
tcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaacaacattcatcaaactgtaaggtgagaatccaaagat |
47349783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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