View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7389_high_1 (Length: 282)
Name: NF7389_high_1
Description: NF7389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7389_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 27203271 - 27203010
Alignment:
| Q |
1 |
tactctagaacagtgaccaaaagcaaaaattaatagcaaaattgatgaattttatacgaactcacactgcatgaatcatattccatgtgaaaagttctca |
100 |
Q |
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| T |
27203271 |
tactctagaacagtgaccaaaagcaaaaattaataggaaaattgataaattttatacgaactcacactgcatgaatcatattccatgtgaaaagtcctca |
27203172 |
T |
|
| Q |
101 |
tgttaaccaaatcgctcttaaaagcagcatcaactgagggaccatcattaccctgaactgtaaacaacacaccaaaaggtccaaaataatttcagcattc |
200 |
Q |
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||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27203171 |
tgttaaccaaatcgcccttaacagcagcatcaaccgagggaccatcattaccctgaactgtaaacaacacaccaaaagggccaaaataatttcagcattc |
27203072 |
T |
|
| Q |
201 |
ttaaaacacagcagtgccaaattaaccttaaacacatcattaaacatataagacgatgatgt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27203071 |
ttaaaacacagcagtgccaaattaaccttaaacacatcattaaacatataagacgatgatgt |
27203010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 16421772 - 16421718
Alignment:
| Q |
59 |
aactcacactgcatgaatcatattccatgtgaaaagttctcatgttaaccaaatc |
113 |
Q |
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||||||||||||||| |||| ||||||||||||| || |||| |||||||||||| |
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| T |
16421772 |
aactcacactgcatgcatcaaattccatgtgaaacgtcctcaagttaaccaaatc |
16421718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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