View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7389_high_2 (Length: 224)
Name: NF7389_high_2
Description: NF7389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7389_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 4951870 - 4951672
Alignment:
| Q |
1 |
tcaacataaagatgattcctctaaaattcatgattgagaatgagatgagactattttccagtttccattataaagatataaattactctatgttccttct |
100 |
Q |
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| T |
4951870 |
tcaacacaaagatgattcctctaaaattcatgattgagaatgagatgagactattttctagtttccattataaagatataaattactctatgttccttct |
4951771 |
T |
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| Q |
101 |
ttttaattttctatgatccatccacctgctatattttacttgtccatattcattggacaagtatgagttttagaagcttatatatgaaataaaagcttta |
200 |
Q |
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| T |
4951770 |
ttttaactttctatgatccatccacctgctatattttacttgtccatattcattggacaagtatgagttttagaagcatatatat-aaataaaagcttta |
4951672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 10483922 - 10483980
Alignment:
| Q |
153 |
ttggacaagtatgagttttagaagcttatatatgaaataaaagctttagatgttgatgt |
211 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
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| T |
10483922 |
ttggacaagtatgagttttagaagcataaatatgaaataaaagctttagatattgatgt |
10483980 |
T |
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