View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7390_low_1 (Length: 428)
Name: NF7390_low_1
Description: NF7390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7390_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 59 - 417
Target Start/End: Complemental strand, 2411125 - 2410780
Alignment:
| Q |
59 |
catttggtctcgggtcgagaccaacctcaagcccaatttcaacctcgaaatgacgaaaagaacccttgaataccgtttcttttattctcttactaccagc |
158 |
Q |
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| T |
2411125 |
catttggtctcgggtcgagtccaacctcaagcccaatttgaac-tcgaaatgacgaaaagaacccttgaataccgtttcttttattctcttac---cagc |
2411030 |
T |
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| Q |
159 |
ctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaacttgttgttacaaacaccaaaacaaaaacaacactgtgttac |
258 |
Q |
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| T |
2411029 |
ctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaacttgttgttac-aacaccaaaacaaaaacaacactgtgttac |
2410931 |
T |
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| Q |
259 |
tgtaacacttttcttttgttaacaaaataatgtcagaaaatcgattcttgcctataattgaagaagaggaaatagaaattgacgacgatttctacgagaa |
358 |
Q |
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|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2410930 |
tgtaacgc--------tcttaacaaaataatgtcagaaaatcgattcttgcctataattgaagaagaggaaatagaaattgacgacgatttctacgagaa |
2410839 |
T |
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| Q |
359 |
gatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctgatgatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2410838 |
gatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctgatgatg |
2410780 |
T |
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