View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7390_low_10 (Length: 226)

Name: NF7390_low_10
Description: NF7390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7390_low_10
NF7390_low_10
[»] chr1 (7 HSPs)
chr1 (11-194)||(50663666-50663863)
chr1 (35-72)||(29095613-29095650)
chr1 (35-70)||(42480194-42480229)
chr1 (35-69)||(24135827-24135861)
chr1 (35-72)||(1270242-1270279)
chr1 (35-72)||(2958782-2958819)
chr1 (35-72)||(31032788-31032825)
[»] chr7 (3 HSPs)
chr7 (35-72)||(23992041-23992078)
chr7 (35-72)||(42195448-42195485)
chr7 (35-72)||(25686436-25686473)
[»] chr4 (5 HSPs)
chr4 (35-72)||(23348207-23348244)
chr4 (35-72)||(26179301-26179338)
chr4 (37-72)||(18375483-18375518)
chr4 (35-72)||(37674091-37674128)
chr4 (35-64)||(41633296-41633325)
[»] chr3 (6 HSPs)
chr3 (35-72)||(521855-521892)
chr3 (35-72)||(1561346-1561383)
chr3 (35-72)||(31788376-31788413)
chr3 (35-72)||(38176480-38176517)
chr3 (35-72)||(45166297-45166334)
chr3 (35-72)||(50612965-50613002)
[»] chr8 (1 HSPs)
chr8 (35-70)||(15562005-15562040)
[»] chr5 (5 HSPs)
chr5 (37-72)||(228094-228129)
chr5 (35-72)||(3456823-3456860)
chr5 (35-64)||(11739310-11739339)
chr5 (35-72)||(29223534-29223571)
chr5 (35-63)||(41326539-41326567)
[»] chr2 (6 HSPs)
chr2 (35-72)||(3810360-3810397)
chr2 (35-64)||(13686072-13686101)
chr2 (35-72)||(35323566-35323603)
chr2 (35-72)||(35676368-35676405)
chr2 (36-72)||(25414984-25415020)
chr2 (35-63)||(42263911-42263939)
[»] scaffold0002 (1 HSPs)
scaffold0002 (35-63)||(492746-492774)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 50663863 - 50663666
Alignment:
Q  11 atcatcaatcaaatagaatcaagaatttttcagccacacctccttgaattgtggtaaatagt----------------ctctttattcttgtaaaattct 94  Q
    ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |                |||||||||||||||||||| |    
T  50663863 atcatcaatcatatagaatcaagaatttttcagtcacacgtccttgaattgtggtaaataatgcattatcattcactgctctttattcttgtaaaatttt 50663764  T
Q  95 tgatgttannnnnnnnnnagagatatagcattactcttcataaagtcaactgtgaacagtcactagttttttagcacatattatacatcaaaggattttt 194  Q
    ||||||||          |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||| ||||    
T  50663763 tgatgttatttttttt--agagatatagcattgctcttcataaagtcaactgtgaacagtcactagttttttagcacagtatatacatgaaaggaatttt 50663666  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 29095613 - 29095650
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    |||||||||||||||||||||||||||||| |||||||    
T  29095613 atttttcagccacacctccttgaattgtggcaaatagt 29095650  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 42480229 - 42480194
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaata 70  Q
    |||||||||||||||||| |||||||||||||||||    
T  42480229 atttttcagccacacctcattgaattgtggtaaata 42480194  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 24135861 - 24135827
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaat 69  Q
    |||||||||||||||||||||||||||||| ||||    
T  24135861 atttttcagccacacctccttgaattgtggcaaat 24135827  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 1270279 - 1270242
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  1270279 atttttcagccacaccttcttgaattgtggcaaatagt 1270242  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 2958782 - 2958819
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  2958782 atttttcagccacacctccttgaattttggcaaatagt 2958819  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 31032788 - 31032825
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  31032788 atttttcagccacacctccttgaactgtggcaaatagt 31032825  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 23992041 - 23992078
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    |||||||||||||||||||||||||||||| |||||||    
T  23992041 atttttcagccacacctccttgaattgtggcaaatagt 23992078  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 42195485 - 42195448
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  42195485 atttttcagacacacctccttgaattgtggtaaatagt 42195448  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 25686473 - 25686436
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  25686473 attttccagccacacctccttaaattgtggtaaatagt 25686436  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 23348207 - 23348244
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    |||||||||||||||||||||||||| |||||||||||    
T  23348207 atttttcagccacacctccttgaattatggtaaatagt 23348244  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 26179301 - 26179338
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  26179301 atttttcagccacacctccttgaattgtgttaaatagt 26179338  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 18375483 - 18375518
Alignment:
Q  37 ttttcagccacacctccttgaattgtggtaaatagt 72  Q
    |||||||||||||||||||||||||||| |||||||    
T  18375483 ttttcagccacacctccttgaattgtggcaaatagt 18375518  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 37674091 - 37674128
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  37674091 atttttcagccacacctctttgaattgtagtaaatagt 37674128  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 41633325 - 41633296
Alignment:
Q  35 atttttcagccacacctccttgaattgtgg 64  Q
    ||||||||||||||||||||||||||||||    
T  41633325 atttttcagccacacctccttgaattgtgg 41633296  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 521855 - 521892
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    |||||||||||||||||||||||||||||| |||||||    
T  521855 atttttcagccacacctccttgaattgtggcaaatagt 521892  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 1561346 - 1561383
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    |||||||||||||||||||||||||||||| |||||||    
T  1561346 atttttcagccacacctccttgaattgtggcaaatagt 1561383  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 31788413 - 31788376
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  31788413 atttttcaatcacacctccttgaattgtggtaaatagt 31788376  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 38176480 - 38176517
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||||||||||||||||||||| || |||||||    
T  38176480 atttttcagccacacctccttgaattgaggcaaatagt 38176517  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 45166334 - 45166297
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  45166334 atttttcagccacgcctccttgaattgtggcaaatagt 45166297  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 50612965 - 50613002
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  50612965 atttttcagtcacacctccttgaattgtggcaaatagt 50613002  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 15562005 - 15562040
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaata 70  Q
    |||||||||||||||||||||||||||||| |||||    
T  15562005 atttttcagccacacctccttgaattgtggcaaata 15562040  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 228129 - 228094
Alignment:
Q  37 ttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||| ||||||||||||||||||||||||||||    
T  228129 ttttcagtcacacctccttgaattgtggtaaatagt 228094  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 3456860 - 3456823
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  3456860 atttttcagtcacacctccttgaattgtggcaaatagt 3456823  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 11739310 - 11739339
Alignment:
Q  35 atttttcagccacacctccttgaattgtgg 64  Q
    ||||||||||||||||||||||||||||||    
T  11739310 atttttcagccacacctccttgaattgtgg 11739339  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 29223571 - 29223534
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  29223571 atttttcagtcacacctccttgaattgtggcaaatagt 29223534  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 41326539 - 41326567
Alignment:
Q  35 atttttcagccacacctccttgaattgtg 63  Q
    |||||||||||||||||||||||||||||    
T  41326539 atttttcagccacacctccttgaattgtg 41326567  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 3810360 - 3810397
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  3810360 atttttcagtcacacctccttgaattgtggcaaatagt 3810397  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 13686101 - 13686072
Alignment:
Q  35 atttttcagccacacctccttgaattgtgg 64  Q
    ||||||||||||||||||||||||||||||    
T  13686101 atttttcagccacacctccttgaattgtgg 13686072  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 35323566 - 35323603
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  35323566 atttttcagccacacctcattgaattgtggcaaatagt 35323603  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 35676368 - 35676405
Alignment:
Q  35 atttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  35676368 atttttcagtcacacctccttgaattgtggcaaatagt 35676405  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 25415020 - 25414984
Alignment:
Q  36 tttttcagccacacctccttgaattgtggtaaatagt 72  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  25415020 tttttcagccatacctccttgaattgtggcaaatagt 25414984  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 42263939 - 42263911
Alignment:
Q  35 atttttcagccacacctccttgaattgtg 63  Q
    |||||||||||||||||||||||||||||    
T  42263939 atttttcagccacacctccttgaattgtg 42263911  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 492774 - 492746
Alignment:
Q  35 atttttcagccacacctccttgaattgtg 63  Q
    |||||||||||||||||||||||||||||    
T  492774 atttttcagccacacctccttgaattgtg 492746  T

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