View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7390_low_2 (Length: 368)
Name: NF7390_low_2
Description: NF7390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7390_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 32095777 - 32095452
Alignment:
| Q |
1 |
gtttactgaaatgaaatggttaacttgtgcagactcagatggaaccggtaattcaggactgcagagagatggtgcaccaatttggagatgtaattagaag |
100 |
Q |
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| T |
32095777 |
gtttactgaaatgaaatggttaacttgtgcagactcagatggaaccggtaattcaggactgcagagagatggtgcaccaatttggagatgtaattagaag |
32095678 |
T |
|
| Q |
101 |
gtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgcttaaaaattgagtggagcac |
200 |
Q |
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| T |
32095677 |
gtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgcttaaaaattgagtggagcac |
32095578 |
T |
|
| Q |
201 |
taagcattgagtaagacacaagttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacactcttgtatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095577 |
taagcattgagtaagacacaagttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacactcttgtatc |
32095478 |
T |
|
| Q |
301 |
ctttggttctctttatagaaatcttg |
326 |
Q |
| |
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| T |
32095477 |
ctttggttctctttatagaaatcttg |
32095452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 82 - 302
Target Start/End: Complemental strand, 32089795 - 32089576
Alignment:
| Q |
82 |
ttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgct |
181 |
Q |
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| T |
32089795 |
ttggagatgtaattagaaggtaattcatat-gtgaaagatgaagactcttatggatgcgtaagattttgttttagtggatatttaatcttttaacttgct |
32089697 |
T |
|
| Q |
182 |
taaaaattgagtggagcactaagcattgagtaagacacaagttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatag |
281 |
Q |
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|||||||| | || |||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||| |||||||| ||||||||||||| ||||||| |
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| T |
32089696 |
taaaaattaactgcagcactaagcatcgagtaagacacaaattgtgagtgaatcattatgaaaaatagggaaagggacactccagctttagtttaaatag |
32089597 |
T |
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| Q |
282 |
aggatcacactcttgtatcct |
302 |
Q |
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||||||||||||||||||||| |
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| T |
32089596 |
aggatcacactcttgtatcct |
32089576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32091651 - 32091611
Alignment:
| Q |
1 |
gtttactgaaatgaaatggttaacttgtgcagactcagatg |
41 |
Q |
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| T |
32091651 |
gtttactgaaatgaaatggttaacctgtgtagactcagatg |
32091611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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