View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7390_low_5 (Length: 296)
Name: NF7390_low_5
Description: NF7390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7390_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 26887477 - 26887180
Alignment:
| Q |
1 |
tcaccaccaatttgattaaca---gcaacaaaagctagtgtagt--agtgtctattgaagtagcatgtgacatgaccattagtttttcattgtttcaacc |
95 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
26887477 |
tcaccaccaatttgattaacaacagcaacaaaagctagtgtagtgtagtgtctattgaagtagcatgcgccatgaccattagtttttcattgtttcaacc |
26887378 |
T |
|
| Q |
96 |
agctagtgttgatataaatttagctacattttgctctttgatccttccaccattagaatcaagcctttcttcatgactcctaaatagagcatcagtatag |
195 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26887377 |
agctagtgttgatataaacttagctacattttgctctttgatccttccaccattagaatcaagtctttcttcatgactcctaaatagagcatcagtatag |
26887278 |
T |
|
| Q |
196 |
tgtgcaagatgaaaatgggtatgacatttcttttcactggccttcttatctgtacttttcacttcctcagcattagagccagcaggtttcaaatactt |
293 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||| |
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| T |
26887277 |
tgtgcaagatgaaaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatactt |
26887180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 51854947 - 51855244
Alignment:
| Q |
1 |
tcaccaccaatttgattaaca---gcaacaaaagctagtgtag--tagtgtctattgaagtagcatgtgacatgaccattagtttttcattgtttcaacc |
95 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
51854947 |
tcaccaccaatttgattaacaacagcaacaaaagctagtgtagggtagtgtctattgaagtagcatgtgccatgaccattagtttttcattttttcaacc |
51855046 |
T |
|
| Q |
96 |
agctagtgttgatataaatttagctacattttgctctttgatccttccaccattagaatcaagcctttcttcatgactcctaaatagagcatcagtatag |
195 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51855047 |
agctagtgttgatataaacttagctacattttgctctttgatccttccaccattagaatcaagtctttcttcatgactcctaaatagagcatcagtatag |
51855146 |
T |
|
| Q |
196 |
tgtgcaagatgaaaatgggtatgacatttcttttcactggccttcttatctgtacttttcacttcctcagcattagagccagcaggtttcaaatactt |
293 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||| |
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| T |
51855147 |
tgtgcaagatgaaaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatactt |
51855244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 146 - 296
Target Start/End: Complemental strand, 35043384 - 35043234
Alignment:
| Q |
146 |
cattagaatcaagcctttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatgacatttcttttcactggccttcttatc |
245 |
Q |
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||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
35043384 |
cattagaattaagtctttcttcatggctcctaaatagagcatcagtatagtgtgcaagatgaaaatgagtttgacatttcttttccatggccttcttatc |
35043285 |
T |
|
| Q |
246 |
tgtacttttcacttcctcagcattagagccagcaggtttcaaatacttctc |
296 |
Q |
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|||||||||||| ||||||||| ||||| | |||||||||||||||||||| |
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| T |
35043284 |
tgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttctc |
35043234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 8944182 - 8944482
Alignment:
| Q |
1 |
tcaccaccaatttgattaaca---gcaacaaaagctagtgtagt--agtgtctattgaagtagcatgtgacatgaccattagtttttcattgtttcaacc |
95 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8944182 |
tcaccaccaatttgattaacaacagcaacaaaagctagtgtagtgtagtgtctattgaagtagcatgtgccatgaccattagtttttcattgtttcaacc |
8944281 |
T |
|
| Q |
96 |
agctagtgttgatataaatttagctacattttgctctttgatccttccaccattagaatcaagcctttcttcatgactcctaaatagagcatcagtatag |
195 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8944282 |
agctagtgttgatataaacttagctacattttgctctttgatccttccaccattagaatcaagtatttcttcatgactcctaaatagagcatcagtatag |
8944381 |
T |
|
| Q |
196 |
tgtgcaagatgaaaatgggtatgacatttcttttcactggccttcttatctgtacttttcacttcctcagcattagagccagcaggtttcaaatacttct |
295 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |||| | | ||||||||||||||||| |
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| T |
8944382 |
tgtgcaagatgaaaatgggtattacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagaaactgtaggtttcaaatacttct |
8944481 |
T |
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| Q |
296 |
c |
296 |
Q |
| |
|
| |
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|
| T |
8944482 |
c |
8944482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 21988925 - 21989075
Alignment:
| Q |
1 |
tcaccaccaatttgattaaca---gcaacaaaagctagtgtagtagtgtctattgaagtagcatgtgacatgaccattagtttttcattgtttcaaccag |
97 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||| |||||| |||||||| ||||||||||| || ||| ||||| |||||||| | ||||| ||||| |
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| T |
21988925 |
tcaccaccagtttgattaacaacagcaactaaagttagtgtcgtagtgtccgctgaagtagcatatgccataaccatcagtttttcttagtttccaccag |
21989024 |
T |
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| Q |
98 |
ctagtgttgatataaatttagctacattttgctctttgatccttccaccat |
148 |
Q |
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|||||| ||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
21989025 |
ctagtgctgatataaacttagctacatttgactctttgatccttccaccat |
21989075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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