View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7390_low_7 (Length: 242)

Name: NF7390_low_7
Description: NF7390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7390_low_7
NF7390_low_7
[»] chr7 (4 HSPs)
chr7 (1-98)||(12543375-12543486)
chr7 (31-98)||(7744501-7744568)
chr7 (175-230)||(7744645-7744700)
chr7 (171-222)||(12543251-12543302)
[»] chr5 (2 HSPs)
chr5 (26-93)||(11893721-11893788)
chr5 (32-93)||(28086278-28086339)
[»] chr8 (2 HSPs)
chr8 (44-98)||(1080879-1080933)
chr8 (40-98)||(24917449-24917507)
[»] chr2 (1 HSPs)
chr2 (33-93)||(562172-562232)
[»] chr3 (1 HSPs)
chr3 (44-98)||(53281561-53281616)
[»] chr6 (3 HSPs)
chr6 (52-98)||(15339447-15339493)
chr6 (40-93)||(33846143-33846196)
chr6 (40-93)||(33847182-33847235)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 12543486 - 12543375
Alignment:
Q  1 aataacaaaatggaagaggcaaaggaaaggaaaatgatccatgtacaccc--------------ccatatacaacccttatgtggcatgggtattttgga 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||    
T  12543486 aataacaaaatggaagaggcaaaggaaaggaaaatgatccatgtacaccctttcatgtacacccccatatacaacccttatgtggcatgggtattttgga 12543387  T
Q  87 aatttcaaacag 98  Q
    ||||||||||||    
T  12543386 aatttcaaacag 12543375  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 7744501 - 7744568
Alignment:
Q  31 aaaatgatccatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 98  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7744501 aaaatgatctatgtacaccccaatatacaccccttatgtggcatgggtattttggaaatttcacacag 7744568  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 7744645 - 7744700
Alignment:
Q  175 caccaccactggctgccgctacattcttgcccttcgccccacccctctctttgatg 230  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7744645 caccaccactggctgccgctgcattcttgcccttcgccccacccctctctttgatg 7744700  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 12543302 - 12543251
Alignment:
Q  171 ccgccaccaccactggctgccgctacattcttgcccttcgccccacccctct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543302 ccgccaccaccactggctgccgctacattcttgcccttcgccccacccctct 12543251  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 11893721 - 11893788
Alignment:
Q  26 aaaggaaaatgatccatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 93  Q
    ||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  11893721 aaagggaaatgattcatgtacaccctcatatacaccccttatgtggcatgggtattttggaaatttca 11893788  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 28086339 - 28086278
Alignment:
Q  32 aaatgatccatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 93  Q
    ||||||| ||||||||||  |||||||| ||||||||||||||||||||||| |||||||||    
T  28086339 aaatgattcatgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttca 28086278  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 1080879 - 1080933
Alignment:
Q  44 tacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 98  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  1080879 tacacccccatatacaccccttatgtggcatgggtattttggaaatttcacacag 1080933  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 24917449 - 24917507
Alignment:
Q  40 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 98  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  24917449 catgtacatccccatatacaccccttatgtggcatgggtattttggaaatttcacacag 24917507  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 562172 - 562232
Alignment:
Q  33 aatgatccatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 93  Q
    |||||| ||||||||||  |||||||| ||||||||||||||||||||||| |||||||||    
T  562172 aatgattcatgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttca 562232  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 53281616 - 53281561
Alignment:
Q  44 tacacccccatatacaaccc-ttatgtggcatgggtattttggaaatttcaaacag 98  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  53281616 tacacccccatatacacccccttatgtggcatgggtattttggaaatttcacacag 53281561  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 15339447 - 15339493
Alignment:
Q  52 catatacaacccttatgtggcatgggtattttggaaatttcaaacag 98  Q
    |||||||| || |||||||||||||||||||||||||||||| ||||    
T  15339447 catatacacccgttatgtggcatgggtattttggaaatttcacacag 15339493  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 33846143 - 33846196
Alignment:
Q  40 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 93  Q
    ||||||||||  |||||||| | ||||||||||||||||||||| |||||||||    
T  33846143 catgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttca 33846196  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 33847235 - 33847182
Alignment:
Q  40 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 93  Q
    ||||||||||  |||||||| | ||||||||||||||||||||| |||||||||    
T  33847235 catgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttca 33847182  T

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