View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7390_low_9 (Length: 238)
Name: NF7390_low_9
Description: NF7390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7390_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3804422 - 3804200
Alignment:
| Q |
1 |
atgagaaagaatcgccatcgccatgcaaaacatattcgtgatcattatcataagaagaagaatagtggaggtggttttcctgggattccggttcataaaa |
100 |
Q |
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| T |
3804422 |
atgagaaagaatcgccatcgccatgcaaaacatattcgtgatcattatcataagaagaagaatagtggaggtggttttcctgggattccggttcacaaaa |
3804323 |
T |
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| Q |
101 |
atggtgaagaaacaacggttatgatagaaaaacattatattcctaccaaatattcgtatatttcacttttctttcatattccttcttttaatatgcactt |
200 |
Q |
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| T |
3804322 |
atggtgaagaaacaacggttatgatagaaaaacattatattcctaccaaatattcgtatgtttcactttgctttcatattccttc-tttaatatgcattt |
3804224 |
T |
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| Q |
201 |
tctccttcattatgtgcatttatt |
224 |
Q |
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||| |||||||||||||||||||| |
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| T |
3804223 |
tcttcttcattatgtgcatttatt |
3804200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 26913547 - 26913706
Alignment:
| Q |
20 |
gccatgcaaaacatattcgtgatcattatcataagaagaagaatagtggaggtggttttcctgggattccggttcataaaaatggtgaagaaacaacggt |
119 |
Q |
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| T |
26913547 |
gccatgcaaaaaatattcgttatcattgtcacaaga---agaatagtggaggtggttttccattggttccggttcagaaggatggtaaagaaacaacggt |
26913643 |
T |
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| Q |
120 |
tatgatagaaaaacattatattcctaccaaatattcgtatatttcacttttctttcatattccttcttt |
188 |
Q |
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| T |
26913644 |
tatgat-taagaac-----attcctagcaaatatacgtatgtttcattttcctttcatattcctacttt |
26913706 |
T |
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