View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7391_low_1 (Length: 394)

Name: NF7391_low_1
Description: NF7391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7391_low_1
NF7391_low_1
[»] chr8 (14 HSPs)
chr8 (1-380)||(25494304-25494683)
chr8 (136-380)||(25677356-25677614)
chr8 (136-380)||(25358012-25358251)
chr8 (136-380)||(25391054-25391292)
chr8 (1-133)||(25677873-25678005)
chr8 (1-133)||(25617131-25617259)
chr8 (1-73)||(25391309-25391381)
chr8 (136-193)||(25650330-25650387)
chr8 (1-61)||(25358290-25358350)
chr8 (236-298)||(33938620-33938682)
chr8 (248-298)||(44132901-44132951)
chr8 (234-303)||(4834993-4835062)
chr8 (136-177)||(25616613-25616654)
chr8 (237-321)||(36623144-36623227)
[»] chr7 (13 HSPs)
chr7 (236-298)||(42971671-42971733)
chr7 (236-320)||(23185908-23185992)
chr7 (236-319)||(16876723-16876806)
chr7 (236-318)||(18867935-18868017)
chr7 (236-318)||(46425325-46425407)
chr7 (236-298)||(37685218-37685278)
chr7 (234-303)||(2628459-2628528)
chr7 (235-294)||(33884075-33884134)
chr7 (244-298)||(11369083-11369137)
chr7 (264-318)||(34328134-34328188)
chr7 (244-298)||(43368514-43368568)
chr7 (236-301)||(22815834-22815898)
chr7 (237-297)||(30061171-30061231)
[»] chr5 (6 HSPs)
chr5 (243-298)||(19824592-19824647)
chr5 (236-298)||(22029878-22029940)
chr5 (236-319)||(37515569-37515652)
chr5 (236-285)||(21355257-21355306)
chr5 (236-294)||(31882574-31882630)
chr5 (264-319)||(37480311-37480366)
[»] chr1 (13 HSPs)
chr1 (236-318)||(48843377-48843459)
chr1 (236-318)||(27032307-27032389)
chr1 (236-318)||(27907704-27907786)
chr1 (237-326)||(43655680-43655767)
chr1 (236-298)||(19431418-19431480)
chr1 (236-297)||(19456339-19456400)
chr1 (234-303)||(48915008-48915077)
chr1 (234-303)||(48915198-48915267)
chr1 (235-303)||(48915399-48915467)
chr1 (236-303)||(24671157-24671224)
chr1 (236-303)||(49177246-49177313)
chr1 (237-303)||(5398045-5398111)
chr1 (236-298)||(11872216-11872278)
[»] chr2 (12 HSPs)
chr2 (235-296)||(862483-862544)
chr2 (243-298)||(32832621-32832676)
chr2 (236-298)||(23395934-23395996)
chr2 (236-312)||(3496792-3496868)
chr2 (236-303)||(11226147-11226214)
chr2 (236-303)||(41069696-41069763)
chr2 (244-298)||(8044289-8044343)
chr2 (236-318)||(15141881-15141963)
chr2 (244-318)||(19037054-19037128)
chr2 (237-303)||(36562763-36562829)
chr2 (236-296)||(1208617-1208677)
chr2 (304-341)||(862746-862783)
[»] chr6 (6 HSPs)
chr6 (196-298)||(3037402-3037502)
chr6 (236-298)||(6139319-6139381)
chr6 (236-318)||(9928262-9928344)
chr6 (244-318)||(7506641-7506715)
chr6 (236-318)||(22469700-22469782)
chr6 (235-319)||(31743860-31743942)
[»] chr3 (7 HSPs)
chr3 (236-319)||(49279490-49279573)
chr3 (236-318)||(4037142-4037224)
chr3 (236-303)||(10688609-10688676)
chr3 (236-319)||(11233507-11233590)
chr3 (244-331)||(39485454-39485554)
chr3 (236-318)||(39972993-39973075)
chr3 (236-319)||(39994192-39994275)
[»] chr4 (4 HSPs)
chr4 (236-298)||(29544190-29544252)
chr4 (236-298)||(46079368-46079430)
chr4 (248-298)||(50041842-50041892)
chr4 (248-298)||(50049064-50049114)
[»] scaffold0466 (1 HSPs)
scaffold0466 (1-51)||(8446-8499)
[»] scaffold0176 (1 HSPs)
scaffold0176 (236-318)||(15092-15174)


Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 25494683 - 25494304
Alignment:
Q  1 tgaacttgatttttgacaacttatctgctcccgaatgtttccatacgtcttctatatatatggtgcaagtggcgacataatggaagaatttcctcacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494683 tgaacttgatttttgacaacttatctgctcccgaatgtttccatacgtcttctatatatatggtgcaagtggcgacataatggaagaatttcctcacatt 25494584  T
Q  101 accgttgccacgttctcatatcacaatcaatgagaggtgtagttcaaagagaggtgtatgagttgattgataatataaggacgggagaggattatgtgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494583 accgttgccacgttctcatatcacaatcaatgagaggtgtagttcaaagagaggtgtatgagttgattgataatataaggacgggagaggattatgtgcc 25494484  T
Q  201 tttggcttcggtgcctttagatgtctttgatggcttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494483 tttggcttcggtgcctttagatgtctttgatggcttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattga 25494384  T
Q  301 ttctcatctaaaatgaactaaaggcaccgaaaggcaccgaatcctctccctgtcaaattcatatgcaataaacttgagat 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494383 ttctcatctaaaatgaactaaaggcaccgaaaggcaccgaatcctctccctgtcaaattcatatgcaataaacttgagat 25494304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 136 - 380
Target Start/End: Complemental strand, 25677614 - 25677356
Alignment:
Q  136 ggtgtagttcaaagagaggtgtatgagttgattgataatataaggacgggagaggattatgtgcctttggcttcggtgcctttagatgtctttgatggct 235  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25677614 ggtgtagttcaaatagaggtgtatgagttgattgataatataaggacaggagaggattatgtgcctt-ggcttcggtgcctttagatgtctttgatggct 25677516  T
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaactaaaggcaccgaaaggc 335  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25677515 tttgttcctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaactaaaggcaccgaaaggc 25677416  T
Q  336 acc---------------gaatcctctccctgtcaaattcatatgcaataaacttgagat 380  Q
    | |               ||||||||||||||||||||||||||||||||||||||||||    
T  25677415 agcgaagccaaaggcattgaatcctctccctgtcaaattcatatgcaataaacttgagat 25677356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 136 - 380
Target Start/End: Complemental strand, 25358251 - 25358012
Alignment:
Q  136 ggtgtagttcaaagagaggtgtatgagttgattgataatataaggacgggagaggattatgtgcctttggcttcggtgcctttagatgtctttgatggct 235  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||          |||||||    
T  25358251 ggtgtagttcaaagagaggtggatgagttgattgataatataaggacgggagaggattatgtgtctttggtttaggtgccttt----------gatggct 25358162  T
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaactaaaggcaccg-----a 330  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     |    
T  25358161 tttgttcctatctctctttaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaactaaaggcagcgaagcta 25358062  T
Q  331 aaggcaccgaatcctctccctgtcaaattcatatgcaataaacttgagat 380  Q
    ||| |||| ||||||||||||||||| |||||||||||||||||||||||    
T  25358061 aagacaccaaatcctctccctgtcaagttcatatgcaataaacttgagat 25358012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 136 - 380
Target Start/End: Complemental strand, 25391292 - 25391054
Alignment:
Q  136 ggtgtagttcaaagagaggtgtatgagttgattgataatataaggacgggagaggattatgtgcctttggcttcggtgcctttagatgtctttgatggct 235  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||| || |||||||||          ||||| |    
T  25391292 ggtgtagttcaaagagaagtggatgagttgattgataatataaggatgggagaggattatgtgtctttggtttaggtgccttt----------gatggat 25391203  T
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaactaaaggcaccg-----a 330  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||     |    
T  25391202 tttgttcctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattcattctcatctaaaatgaactaaagacaccgaagcta 25391103  T
Q  331 aaggcaccgaatcctctccctgtcaaattcatatgcaataaacttgagat 380  Q
    |||||||| |||||| || ||||||| |||||||||||||||||||||||    
T  25391102 aaggcaccaaatcct-tctctgtcaagttcatatgcaataaacttgagat 25391054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 25678005 - 25677873
Alignment:
Q  1 tgaacttgatttttgacaacttatctgctcccgaatgtttccatacgtcttctatatatatggtgcaagtggcgacataatggaagaatttcctcacatt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  25678005 tgaacttgatttttgacaacttatctgctccccaatgtttccatacgtcttctatatatatggtgcaagtgaccacataatggaagaatttcctcacatt 25677906  T
Q  101 accgttgccacgttctcatatcacaatcaatga 133  Q
    |||||||||||||||||||||||||||||||||    
T  25677905 accgttgccacgttctcatatcacaatcaatga 25677873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 25617259 - 25617131
Alignment:
Q  1 tgaacttgatttttgacaacttatctgctcccgaatgtttccatacgtcttctatatatatggtgcaagtggcgacataatggaagaatttcctcacatt 100  Q
    |||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||  ||   ||||| ||| | ||||||||||||| ||||||    
T  25617259 tgaacttgatttttgacaacttatctgctccccattgtttccgtacgtcttttatatatata-tg---gtggccacacactggaagaatttccacacatt 25617164  T
Q  101 accgttgccacgttctcatatcacaatcaatga 133  Q
    ||||||||||| |||||||||||||||||||||    
T  25617163 accgttgccaccttctcatatcacaatcaatga 25617131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25391381 - 25391309
Alignment:
Q  1 tgaacttgatttttgacaacttatctgctcccgaatgtttccatacgtcttctatatatatggtgcaagtggc 73  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25391381 tgaacttgatttttgacaacttatctgctccccaatgtttccatacgtcttctatatatatggtgcaagtggc 25391309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 25650387 - 25650330
Alignment:
Q  136 ggtgtagttcaaagagaggtgtatgagttgattgataatataaggacgggagaggatt 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25650387 ggtgtagttcaaagagaggtgtatgagttgattgataatataaggacgggagaggatt 25650330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25358350 - 25358290
Alignment:
Q  1 tgaacttgatttttgacaacttatctgctcccgaatgtttccatacgtcttctatatatat 61  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  25358350 tgaacttgatttttgacaacttatctgatccccaatgtttccatacgtcttctatatatat 25358290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 33938682 - 33938620
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||| ||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||||||||    
T  33938682 tttgtgtctatctctctcttaacaattcattctctctcatctaaataatttattttaatcatt 33938620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 44132951 - 44132901
Alignment:
Q  248 tctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||||| ||||| ||||||||| ||||| || ||||||||||||||||||    
T  44132951 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 44132901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 4835062 - 4834993
Alignment:
Q  234 cttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    ||||||| ||||||| ||||| ||| | | ||||||| ||| |||| |||||||||||||||||| ||||    
T  4835062 cttttgtgtctatctttctcttaacaactcattctctttcacctaaataatttattttaatcattcattc 4834993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 25616654 - 25616613
Alignment:
Q  136 ggtgtagttcaaagagaggtgtatgagttgattgataatata 177  Q
    |||||||||||||||||||||||  | |||||||||||||||    
T  25616654 ggtgtagttcaaagagaggtgtaataattgattgataatata 25616613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 36623227 - 36623144
Alignment:
Q  237 ttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaactaa 321  Q
    |||||| |||||||||| ||| || || |||||| || ||||| ||||||||||||| ||||   ||||||||||||| ||||||    
T  36623227 ttgtttttatctctctcaaaatcaata-ttctctttcgtctaaataatttattttaaccattttctctcatctaaaataaactaa 36623144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 42971733 - 42971671
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||||    
T  42971733 tttgtttctatctctctcttaaccatcaattctctctcatctaaataatttattttaatcatt 42971671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 23185992 - 23185908
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaacta 320  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||||    
T  23185992 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacta 23185908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 16876806 - 16876723
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaact 319  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | ||||||||||||||||    
T  16876806 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaact 16876723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 18868017 - 18867935
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  18868017 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 18867935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 46425407 - 46425325
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  46425407 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 46425325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 37685278 - 37685218
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    |||||| |||||||||||| ||||||| |||||||  ||||||| ||||||||||||||||||    
T  37685278 tttgttcctatctctctcttaaccattcattctct--catctaaataatttattttaatcatt 37685218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 2628528 - 2628459
Alignment:
Q  234 cttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    ||||||| ||||||||||||| ||| | | ||||||| |||||||| || ||||||||||||||| ||||    
T  2628528 cttttgtgtctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcatttattc 2628459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 33884134 - 33884075
Alignment:
Q  235 ttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaat 294  Q
    ||||||| |||| | ||||| ||||||| ||||||| |||||||| ||||||||||||||    
T  33884134 ttttgttcctatatatctctcaaccattcattctctctcatctaaataatttattttaat 33884075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 11369137 - 11369083
Alignment:
Q  244 tatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||||||||| ||||||| ||| ||| || ||||| ||||||||||||||||||    
T  11369137 tatctctctcttaaccatttattttctctcgtctaaataatttattttaatcatt 11369083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 34328134 - 34328188
Alignment:
Q  264 attctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  34328134 attctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 34328188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 43368568 - 43368514
Alignment:
Q  244 tatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    |||||||||||||| || ||||||  | |||||||| ||||||||||||||||||    
T  43368568 tatctctctctaaatcaataattcattctcatctaaataatttattttaatcatt 43368514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 22815898 - 22815834
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgat 301  Q
    |||||| |||| || |||| ||||||| ||||||| | ||||||| ||||||||||||||||||||    
T  22815898 tttgttcctatttccctcttaaccattcattctctctaatctaat-aatttattttaatcattgat 22815834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 30061231 - 30061171
Alignment:
Q  237 ttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcat 297  Q
    |||||| ||||||||| | || || ||||| ||| |||||||| |||||||||||||||||    
T  30061231 ttgtttttatctctctgttaatcaataattttctctcatctaaataatttattttaatcat 30061171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 19824592 - 19824647
Alignment:
Q  243 ctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    |||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  19824592 ctatctctctctaaaccattcattctctctcatctaaataatttattttaatcatt 19824647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 22029940 - 22029878
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    |||||||||||||||||||||| |||| ||||| | ||||| || ||||||||||||||||||    
T  22029940 tttgtttctatctctctctaaatcatttattctatctcatccaaataatttattttaatcatt 22029878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 37515652 - 37515569
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaact 319  Q
    ||||| ||||||||||||| ||| | | ||| |||||||||||| ||||||||||||||||||   | | ||||||||||||||    
T  37515652 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctcttttatctaaaatgaact 37515569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 21355306 - 21355257
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatt 285  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||| |||||    
T  21355306 tttgtttctatctctctcttaaccattcattctctctcatctaaataatt 21355257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 31882574 - 31882630
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaat 294  Q
    |||||||||||||||||  ||| |||| ||||||| |||||||| ||||||||||||||    
T  31882574 tttgtttctatctctct--aaatcattcattctctctcatctaaataatttattttaat 31882630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 37480311 - 37480366
Alignment:
Q  264 attctctatcatctaattaatttattttaatcattgattctcatctaaaatgaact 319  Q
    ||||||| |||||||| ||||||||||||||||||   | ||||||||||||||||    
T  37480311 attctctctcatctaagtaatttattttaatcattttctttcatctaaaatgaact 37480366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 48843377 - 48843459
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  48843377 tttgtatctatctctctcttaacaattcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 48843459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 27032389 - 27032307
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   |||||| ||||||||||    
T  27032389 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctctcatataaaatgaac 27032307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 27907704 - 27907786
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  27907704 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 27907786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 326
Target Start/End: Original strand, 43655680 - 43655767
Alignment:
Q  237 ttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaactaaaggca 326  Q
    |||||||||| ||||||| |||||||  |||||| |||| ||| |||||||||   ||||||  ||||||||||||||||||||||||||    
T  43655680 ttgtttctatttctctcttaaccattcgttctctctcatttaaataatttattc--atcattctttctcatctaaaatgaactaaaggca 43655767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 19431480 - 19431418
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||| ||||| ||||||| ||||| | ||||||| |||||||| ||||||||||||||||||    
T  19431480 tttgtgtctatatctctcttaaccaatcattctctctcatctaaataatttattttaatcatt 19431418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 19456400 - 19456339
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcat 297  Q
    ||||| ||||||||| ||| ||| ||| ||||||| |||||||| |||||||||||||||||    
T  19456400 tttgtgtctatctctttcttaacaattcattctctctcatctaaataatttattttaatcat 19456339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 48915077 - 48915008
Alignment:
Q  234 cttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    ||||||| ||||||||||||| ||| | | ||||||| ||||| || |||||||||||||||||| ||||    
T  48915077 cttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattc 48915008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 48915267 - 48915198
Alignment:
Q  234 cttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    ||||||| ||||||||||||| ||| | | ||||||| ||||| || |||||||||||||||||| ||||    
T  48915267 cttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattc 48915198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 48915467 - 48915399
Alignment:
Q  235 ttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    |||||| ||||||||||||| ||| | | ||||||| ||||| || |||||||||||||||||| ||||    
T  48915467 ttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattc 48915399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 24671157 - 24671224
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    |||||||| |||| ||||| ||||| | ||||||| |||| ||| |||||||||||||||||| ||||    
T  24671157 tttgtttccatctttctcttaaccactcattctctctcatttaaataatttattttaatcattcattc 24671224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 49177246 - 49177313
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    |||||| |||||||||| | ||||||| ||| ||| |||||||| |||||||||||||| ||| ||||    
T  49177246 tttgttcctatctctcttttaaccattcattttctctcatctaaataatttattttaataatttattc 49177313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 5398111 - 5398045
Alignment:
Q  237 ttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    |||| ||||||||||||| ||||| | ||||||| |||||||| || ||||||||||| ||| ||||    
T  5398111 ttgtctctatctctctcttaaccactcattctctctcatctaaatagtttattttaataattcattc 5398045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 11872278 - 11872216
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||||||||| ||||||  ||||| ||||||||| ||||| || ||||||||| ||||||||    
T  11872278 tttgtttctatatctctcataaccaataattctctctcatcaaaataatttattataatcatt 11872216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 862483 - 862544
Alignment:
Q  235 ttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatca 296  Q
    |||||||||||||||||||||||| ||| ||||| | |||||||| ||||||||||||||||    
T  862483 ttttgtttctatctctctctaaactatttattctttttcatctaaataatttattttaatca 862544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 32832676 - 32832621
Alignment:
Q  243 ctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    |||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||    
T  32832676 ctatctctctcttaaccattcattctctctcatctaaataatttattttaatcatt 32832621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 23395934 - 23395996
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||| ||||||||||||| ||| | | |||||||||||||||| ||||||||||||||||||    
T  23395934 tttgtgtctatctctctcttaacaactcattctctatcatctaaataatttattttaatcatt 23395996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 3496868 - 3496792
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaa 312  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   |||||||||||    
T  3496868 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctctcatctaaa 3496792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 11226147 - 11226214
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| |||||||||||||||||| ||||    
T  11226147 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattc 11226214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 41069763 - 41069696
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    ||||| ||||||| ||||| ||| ||| ||||||| |||||||| |||||||||||||||||| ||||    
T  41069763 tttgtgtctatctgtctcttaacaattcattctctctcatctaaataatttattttaatcattcattc 41069696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 8044289 - 8044343
Alignment:
Q  244 tatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||| ||||| ||||||||||||||  |||||||| ||||||||||||||||||    
T  8044289 tatctttctcttaaccattaattctccttcatctaaataatttattttaatcatt 8044343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 15141881 - 15141963
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||||| | ||| | | ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  15141881 tttgtgtctatctctcttttaacaacttattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 15141963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 19037128 - 19037054
Alignment:
Q  244 tatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 19037054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 36562829 - 36562763
Alignment:
Q  237 ttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    ||||| |||||||||||| || |||| ||||||| |||||||| |||||||||||| ||||| ||||    
T  36562829 ttgttcctatctctctcttaatcattcattctctctcatctaaataatttattttactcattcattc 36562763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 1208617 - 1208677
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatca 296  Q
    ||||| ||||||||||||| ||||| ||||||||| ||||  || ||||||||||||||||    
T  1208617 tttgtctctatctctctcttaaccaataattctctctcattaaaataatttattttaatca 1208677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 862746 - 862783
Alignment:
Q  304 tcatctaaaatgaactaaaggcaccgaaaggcaccgaa 341  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  862746 tcatctaaaatgaactaaaagcacccaaaggcaccgaa 862783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 3037502 - 3037402
Alignment:
Q  196 gtgcctttggcttcggtgcctttagatgtctttgatggcttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatc 295  Q
    ||||||||| ||||| ||||||| |||| ||||| |   ||||||||||||||||||   ||||||| ||||||| ||||||||  ||||||||||||||    
T  3037502 gtgcctttgccttcgatgcctttggatgcctttgttaatttttgtttctatctctctt--aaccattcattctctttcatctaaaaaatttattttaatc 3037405  T
Q  296 att 298  Q
    |||    
T  3037404 att 3037402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 6139319 - 6139381
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    |||||| |||||||||| | ||||||| ||||||| |||||||| ||||||||||||||||||    
T  6139319 tttgttcctatctctcttttaaccattcattctctctcatctaaataatttattttaatcatt 6139381  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 9928262 - 9928344
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  9928262 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 9928344  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 7506641 - 7506715
Alignment:
Q  244 tatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  7506641 tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 7506715  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 22469700 - 22469782
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||| ||| ||| | | ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  22469700 tttgtgtctatctctttcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 22469782  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 31743860 - 31743942
Alignment:
Q  235 ttttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaact 319  Q
    |||||| ||||||||||| | ||| | | |||||||  ||||||| ||||||||||||||||||   | ||||||||||||||||    
T  31743860 ttttgtgtctatctctcttttaacaacttattctct--catctaaataatttattttaatcattctctttcatctaaaatgaact 31743942  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 49279490 - 49279573
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaact 319  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | ||||||||||||||||    
T  49279490 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaact 49279573  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 4037142 - 4037224
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | |||||||||||||||    
T  4037142 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 4037224  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 10688609 - 10688676
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattc 303  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| |||||||||||||||||| ||||    
T  10688609 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattc 10688676  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 11233507 - 11233590
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaact 319  Q
    ||||| ||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||||||   | ||||||||||| ||||    
T  11233507 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaataaact 11233590  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 39485554 - 39485454
Alignment:
Q  244 tatctctctctaaaccattaattctctatc--atctaattaatttattttaatcattgat-----------tctcatctaaaatgaactaaaggcaccga 330  Q
    ||||||||||||||||||| ||||||| ||  |||||| |||||||||||||||||| ||           |||||||||||||||||||||||||||||    
T  39485554 tatctctctctaaaccattcattctctctctcatctaaataatttattttaatcattcatccaaccttctctctcatctaaaatgaactaaaggcaccga 39485455  T
Q  331 a 331  Q
    |    
T  39485454 a 39485454  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 39972993 - 39973075
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||||||| ||| | | ||||||| ||||| || ||||||||||||||||||   | |||||||||||||||    
T  39972993 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattctctttcatctaaaatgaac 39973075  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 39994192 - 39994275
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaact 319  Q
    ||||| ||||||||||| | ||| | | ||||||| |||||||| ||||||||||||||||||   | ||||||||||| ||||    
T  39994192 tttgtatctatctctcttttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaattaact 39994275  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 29544252 - 29544190
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||| ||||||||||| | ||| | | |||||||||||||||| ||||||||||||||||||    
T  29544252 tttgtgtctatctctctattaacaactcattctctatcatctaaataatttattttaatcatt 29544190  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 46079430 - 46079368
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||| ||||||| ||||| ||| | | ||||||| |||||||| ||||||||||||||||||    
T  46079430 tttgtgtctatctgtctcttaacaactcattctctctcatctaaataatttattttaatcatt 46079368  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 50041892 - 50041842
Alignment:
Q  248 tctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||||| ||||| ||||||||| ||||| || ||||||||||||||||||    
T  50041892 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 50041842  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 50049114 - 50049064
Alignment:
Q  248 tctctctaaaccattaattctctatcatctaattaatttattttaatcatt 298  Q
    ||||||| ||||| ||||||||| ||||| || ||||||||||||||||||    
T  50049114 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 50049064  T

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Target: scaffold0466 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8446 - 8499
Alignment:
Q  1 tgaacttgatttttgacaact---tatctgctcccgaatgtttccatacgtctt 51  Q
    |||||||||||||||||||||   ||||||||||| | ||||||||||||||||    
T  8446 tgaacttgatttttgacaactaattatctgctccccactgtttccatacgtctt 8499  T

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Target: scaffold0176 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 15092 - 15174
Alignment:
Q  236 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaac 318  Q
    ||||| ||||||||| ||| ||| | | ||||||| ||||| || ||||||||||||||||||   | |||||||||||||||    
T  15092 tttgtgtctatctctatcttaacaactcattctctctcatcaaaataatttattttaatcattatctttcatctaaaatgaac 15174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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