View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7392_high_2 (Length: 554)
Name: NF7392_high_2
Description: NF7392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7392_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 225 - 536
Target Start/End: Original strand, 34432268 - 34432582
Alignment:
| Q |
225 |
cacgtgtcattaatcatttttactgctttgttaacnnnnnnn---tggtactactgttaaacacttttggaatctatgtattgtaatattttccacnnnn |
321 |
Q |
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| T |
34432268 |
cacgtgtcattaatcatttttactgctttgttaacaaaaaaaaaatggtactactgttaaacacttttggaatctatgtattgtaatattttcctcaaaa |
34432367 |
T |
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| Q |
322 |
nnntgtattgtaattttgaaaatgttttgcatttttggttaataaaataattaaagtggttaatgaaatttatattttaaaagtagtaaacaaggtatat |
421 |
Q |
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| T |
34432368 |
aaatgtattgtaattttgaaaatgttttgcatttttggttaataaaataattaaagtggttaatgaaatttatattttaaaagtagtaaacaaggtatat |
34432467 |
T |
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| Q |
422 |
tttgttggttaatgcaactgtaagattagttgaattcaacacttttcatcgtttttcaataaatttacttataaaggattgagtatatgatgatgtaatc |
521 |
Q |
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| T |
34432468 |
tttgttggttaatgcaactgtaagattagttgaattcaacacttttcatcatttttcaataaatttacttataaaggattgagtatccgatggtgtaatc |
34432567 |
T |
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| Q |
522 |
ttaataggtcatgtt |
536 |
Q |
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| T |
34432568 |
ttaataggtcatgtt |
34432582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 34432091 - 34432204
Alignment:
| Q |
46 |
acggcggtgatggaagattctagaaacgtgattctctgctttttagcgggaaaatgggggaagatannnnnnncccctctttttataagaaaaacgacac |
145 |
Q |
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| T |
34432091 |
acggcggcgacggaagattctagaaacgtgattctctgctttttagcgggaaaatggtggaagatatttttt--ccct-tttttataagcaaaacgacac |
34432187 |
T |
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| Q |
146 |
cgtagtgaactatcttc |
162 |
Q |
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| T |
34432188 |
cgtagtgaactatcttc |
34432204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 34432070 - 34432102
Alignment:
| Q |
13 |
gagaagaagcaggttaccattacggcggcgacg |
45 |
Q |
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| T |
34432070 |
gagaagaagcaggttaccattacggcggcgacg |
34432102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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