View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7392_high_3 (Length: 481)
Name: NF7392_high_3
Description: NF7392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7392_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 34871383 - 34871112
Alignment:
| Q |
18 |
catgacatacttgcaaaaactctaggtaagttagacgcttcttctagtatc-gatatcatggac-----ctcctctcctcgaa--cactaaacaaacatg |
109 |
Q |
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| T |
34871383 |
catgacatagttgcaaaaactctaggtaagttagacgcttcttctagtatcagatatcatggacaacccctcctctcctcgaaaacactaaacaaacttg |
34871284 |
T |
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| Q |
110 |
gtttaaaatattgattttcagtcaactcaagccaattaagtttgatcggatcatgtaattaatttgatctaaaccgaaccaactcaacacatgaacatcc |
209 |
Q |
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| T |
34871283 |
gtttaaaatattgattttcagtcaactgaagccaattaagtttgattggatcatgtaattagtttgatctaaaccgaaccaactcaacacattaacatcc |
34871184 |
T |
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| Q |
210 |
ttactcagtaaaatacaacataaaacccgcacaaacactcatagatgacgactagtgttcaaatattgcttg |
281 |
Q |
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| T |
34871183 |
ttactcattaaaatacaacataaaacccgcacaaacactcatagatgacgactagtgttcaaatattgcttg |
34871112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 348 - 468
Target Start/End: Complemental strand, 34871045 - 34870929
Alignment:
| Q |
348 |
tttctgactcttacaaaaaaccaaatggtcgaagaatatatactaatagaaagcttcccatttcagtaaccaaagcatctcattcgtcttgttcataaat |
447 |
Q |
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| T |
34871045 |
tttctgactcttataaaaaagcaaatggtcgaagaata----ctaatagaaagcttcccatttcagtaaccaaagcatctcattcgtcttgttcataaat |
34870950 |
T |
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| Q |
448 |
aaggtaatctttgcggccttc |
468 |
Q |
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| T |
34870949 |
aaggtaatctttgcggccttc |
34870929 |
T |
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