View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7392_high_4 (Length: 406)
Name: NF7392_high_4
Description: NF7392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7392_high_4 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 37 - 406
Target Start/End: Complemental strand, 39839644 - 39839275
Alignment:
| Q |
37 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39839644 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39839545 |
T |
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| Q |
137 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839544 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
39839445 |
T |
|
| Q |
237 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839444 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
39839345 |
T |
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| Q |
337 |
actcaacttcatttgtcttgaccctccacaatccactggtttcatcatacttagcagattgaacacactc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839344 |
actcaacttcatttgtcttgaccctccacaatccactggtttcatcatacttagcagattgaacacactc |
39839275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 37 - 406
Target Start/End: Original strand, 39733314 - 39733683
Alignment:
| Q |
37 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39733314 |
cacaaaagttaaaaaagaattactatgaagcactgacacatataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39733413 |
T |
|
| Q |
137 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733414 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
39733513 |
T |
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| Q |
237 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
336 |
Q |
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| T |
39733514 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
39733613 |
T |
|
| Q |
337 |
actcaacttcatttgtcttgaccctccacaatccactggtttcatcatacttagcagattgaacacactc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733614 |
actcaacttcatttgtcttgaccctccacaatccactggtttcatcatacttagcagattgaacacactc |
39733683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 342
Target Start/End: Complemental strand, 31290504 - 31290472
Alignment:
| Q |
310 |
tagcaacaacaagccacctacaaatatactcaa |
342 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
31290504 |
tagcaacaacaagccacctacaaatattctcaa |
31290472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 101 - 350
Target Start/End: Original strand, 29857435 - 29857687
Alignment:
| Q |
101 |
taccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttc |
200 |
Q |
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|||||||||||||| ||| || |||||| | |||| |||||||| ||||||||| || ||||||||||||||||| ||||| |||||||| | ||||||| |
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| T |
29857435 |
taccgagctacgaagaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttc |
29857534 |
T |
|
| Q |
201 |
tttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattcagaa---agtccttcaatttcaggagtaacacactcag |
297 |
Q |
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|| ||| |||| ||| ||||| || ||||||||||||| || || |||||| ||||||||| | | |||||||| | ||| ||||||||| | |
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| T |
29857535 |
ttccctctaaaactttcacctgatttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctg |
29857634 |
T |
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| Q |
298 |
cattttcgccggtagcaacaacaagccacctacaaatatactcaacttcattt |
350 |
Q |
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|||| || || |||||||| |||||| |||||||||||||||||||||||||| |
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| T |
29857635 |
cattctcaccagtagcaaccacaagcgacctacaaatatactcaacttcattt |
29857687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 17408021 - 17407974
Alignment:
| Q |
300 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
347 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17408021 |
ttttcaccggtagcaaccacaagccacctacaaatatactcaacttca |
17407974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 17408175 - 17408116
Alignment:
| Q |
146 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
205 |
Q |
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||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
17408175 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
17408116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 19040190 - 19040219
Alignment:
| Q |
56 |
ttactatgaagcactgacacagataccaga |
85 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
19040190 |
ttactatgaagcactgacacagataccaga |
19040219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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