View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7392_low_5 (Length: 379)
Name: NF7392_low_5
Description: NF7392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7392_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 39839298 - 39838950
Alignment:
| Q |
13 |
atacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttgaagggtat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839298 |
atacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttgaagggtat |
39839199 |
T |
|
| Q |
113 |
tcagggaaatcttcaggcattggaaggttaggtagttgacagaattgttttggaaggtgaagtttcaatctgtcgtaggctcttttttgccatagtgatg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39839198 |
tcagggaaatcttcaggcattggaaggttaggtagttgacagaattgttttggaaggtgaagtttcaatctgtcgtaggttcttttttgccatagtgatg |
39839099 |
T |
|
| Q |
213 |
ctatgcaatcagctctttcgagaacaacgaagggtactccttgttctctaagacatgctgccgttgcaagaccagatggacctgcacctatgatcacagg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839098 |
ctatgcaatcagctctttcgagaacaacgaagggtaccccttgttctctaagacatgctgccgttgcaagaccagatggacctgcacctatgatcacagg |
39838999 |
T |
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| Q |
313 |
tccattgacccaaatgcaacggcgtgagagaaagtcttggtgatcagct |
361 |
Q |
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| T |
39838998 |
tccattgacccaaatgcaacggcgtgagagaaagtcttggtgatcagct |
39838950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 31290181 - 31290041
Alignment:
| Q |
43 |
ttgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttgaagggtattcagggaaatcttcaggcattggaaggtta |
142 |
Q |
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| T |
31290181 |
ttgcggggagatttcaaatttgttagcatagtttacaagatagtttatgaactgtttctttgaagggtattcagggaaatcttcaagcattggaaggtta |
31290082 |
T |
|
| Q |
143 |
ggtagttgacagaattgttttggaaggtgaagtttcaatct |
183 |
Q |
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| T |
31290081 |
ggtagttgacataatggtttaggaaggtgaagtttgaatct |
31290041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 31290616 - 31290748
Alignment:
| Q |
38 |
ttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttgaagggtattcagggaaatcttcaggcattggaa |
137 |
Q |
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|||||||| |||| ||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31290616 |
ttgaattgtgggtcgatttcaaatttgttcggatagttttcaaggtagtttatgaactgtttctttgaagggtattcatggaaatcttcaggcattggaa |
31290715 |
T |
|
| Q |
138 |
ggttaggtagttgacagaattgttttggaaggt |
170 |
Q |
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||||| |||||||||| |||||||| ||||||| |
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| T |
31290716 |
ggttaagtagttgacacaattgtttaggaaggt |
31290748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 39733660 - 39733741
Alignment:
| Q |
13 |
atacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaat |
94 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733660 |
atacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaat |
39733741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 350
Target Start/End: Original strand, 31290746 - 31290851
Alignment:
| Q |
245 |
ggtactccttgttctctaagacatgctgccgttgcaagaccagatggacctgcacctatgatcacaggtccattgacccaaatgcaacggcgtgagagaa |
344 |
Q |
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||||| ||||||||||||||||||| || ||| || || ||||||||| ||||| |||||||||| ||||| ||| | ||||||||||| ||||||||| |
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| T |
31290746 |
ggtaccccttgttctctaagacatgttgtcgtcgctaggtcagatggacttgcacatatgatcacacgtccactgaactaaatgcaacggagtgagagaa |
31290845 |
T |
|
| Q |
345 |
agtctt |
350 |
Q |
| |
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|||||| |
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| T |
31290846 |
agtctt |
31290851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 359
Target Start/End: Complemental strand, 31290016 - 31289908
Alignment:
| Q |
251 |
ccttgttctctaagacatgctgccgttgcaagaccagatggacctgcacctatgatcacaggtccattgacccaaatgcaacggcgtgagagaaagtctt |
350 |
Q |
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||||||||||||||| |||||| |||||| || ||||||||| || | | ||||||| |||||| || ||||||||||||| ||||||||||||||| |
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| T |
31290016 |
ccttgttctctaagatatgctgacgttgctaggtcagatggacttgtgcttttgatcacgggtccaccgagccaaatgcaacggtgtgagagaaagtctt |
31289917 |
T |
|
| Q |
351 |
ggtgatcag |
359 |
Q |
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||||||| |
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| T |
31289916 |
catgatcag |
31289908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 29857736 - 29858052
Alignment:
| Q |
17 |
ttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttgaagggtattcag |
116 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| | || || ||| |||||| ||| ||||||| |||||||||| || ||||||| |
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| T |
29857736 |
ttagcagattgaacacactcgttgaatcgcgggttgatttcaaagtgtttcgcgtaggattcaagatagtttatgaactgtttctttgttggatattcag |
29857835 |
T |
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| Q |
117 |
ggaaatcttcaggcattggaaggttaggtagttgacagaattgttttggaaggtgaagtttcaatctgtcgtaggctcttttttgccatagtgatgctat |
216 |
Q |
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| || |||| || | ||||| |||||||||||||||||||||||| || ||||||||||| |||||||| || | |||||||||||||||||| ||||| |
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| T |
29857836 |
gaaattcttgtgggaatggaaagttaggtagttgacagaattgtttagggaggtgaagttttaatctgtcatatgttcttttttgccatagtgaagctat |
29857935 |
T |
|
| Q |
217 |
gcaatcagctctttcgagaacaacgaagggtactccttgttctctaagacatgctgccgttgcaagaccagatggacctgcacctatgatcacaggtcca |
316 |
Q |
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||||| | |||||| ||||| | ||||||||||||||||| ||||||||||||| ||||| ||||| ||||| ||||| |||| || | ||| ||| |
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| T |
29857936 |
gcaatttgatctttcaagaaccatgaagggtactccttgttgcttaagacatgctgctgttgctagacctgatggtcctgctcctactattataggacca |
29858035 |
T |
|
| Q |
317 |
ttgacccaaatgcaacg |
333 |
Q |
| |
|
|| |||||||||||||| |
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| T |
29858036 |
tttacccaaatgcaacg |
29858052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 17407826 - 17407750
Alignment:
| Q |
101 |
tttgaagggtattcagggaaatcttcaggcattggaaggttaggtagttgacagaattgttttggaaggtgaagttt |
177 |
Q |
| |
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|||||||||||||||||||| | ||||| | ||||| || ||||||||||| |||||||| ||||| |||||||| |
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| T |
17407826 |
tttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttaggaagatgaagttt |
17407750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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