View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7392_low_7 (Length: 340)
Name: NF7392_low_7
Description: NF7392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7392_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 3884837 - 3885155
Alignment:
| Q |
17 |
agaaattactatcaaagaaagtgtaaagaatttgataaaatcactcctctccacccttggttctatctgtaggaattttctatgcttaatttcgattgtc |
116 |
Q |
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| T |
3884837 |
agaaattactatcaaagaaagtgtaaagaatttgattaaatcactcctctccacccttggttctatttgtaggaattttctatgcttaatttcgatcgtc |
3884936 |
T |
|
| Q |
117 |
tctttttgttgcggtgtataatttttcttnnnnnnnccagtttctctttactgatgttatagtgatcattggtgaatttccaaattccttttcattcgtg |
216 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884937 |
tcttttcgttgcggtgtataatttttcttaaaaaaaccagtttctctttactgatgttatagtgatcattggtgaatttccaaattccttttcattcgtg |
3885036 |
T |
|
| Q |
217 |
tgatcccattttctcatccctaacattggtgctctaattatcaccagggaagccttccttgagacctctctccatggtgttgataactcaattccagaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3885037 |
tgatcccattttctcatccctaacattggtgctctaattatcactagggcagccttccttgagacctctctccatggtgttgataactcaattccagaaa |
3885136 |
T |
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| Q |
317 |
cccgtctgcagtcgtgttc |
335 |
Q |
| |
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||||||||||||||||||| |
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| T |
3885137 |
cccgtctgcagtcgtgttc |
3885155 |
T |
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