View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7393_high_6 (Length: 229)
Name: NF7393_high_6
Description: NF7393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7393_high_6 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
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| [»] chr7 (2 HSPs) |
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|
| [»] chr4 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 13867879 - 13868107
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
13867879 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggtatcattgttggcgaggcagcatt |
13867978 |
T |
|
| Q |
101 |
gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13867979 |
gtgtgttactgggtgtggcatggcagagtctgtttctcatttatttctacattgtgctacttttggtactttatggcattttgtcaggtgttggattgga |
13868078 |
T |
|
| Q |
201 |
atgtcaggtgctgatccccttaatattga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
13868079 |
atgtcaggtgctgatccccttaatattga |
13868107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 33150937 - 33150843
Alignment:
| Q |
135 |
tctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattga |
229 |
Q |
| |
|
|||||||||||||| || || || |||||||| | ||||||||| || |||||| |||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
33150937 |
tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattga |
33150843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26510421 - 26510646
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt |
100 |
Q |
| |
|
|||| ||||| ||||| |||||||| | ||||| ||||| |||||||||||||||||| | ||| | | ||||| | |||| | ||| |||| | |
|
|
| T |
26510421 |
cgctgaaggtctccatctttgcttgacggttgttgcgggacaggttgccgactaagaataatcttatgagacgtggagtaatcaataccgaagcagttat |
26510520 |
T |
|
| Q |
101 |
gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga |
200 |
Q |
| |
|
||||||||| || || |||| || ||||||| |||| || ||||| |||||||| | ||| ||||| ||||||||| | |||||| |||||| ||| |
|
|
| T |
26510521 |
gtgtgttacaggatgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcgga |
26510620 |
T |
|
| Q |
201 |
atgtcaggtgctgatccccttaatat |
226 |
Q |
| |
|
|||||||||| ||| ||| ||||||| |
|
|
| T |
26510621 |
atgtcaggtgttgacccctttaatat |
26510646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45795300 - 45795267
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgtt |
34 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
45795300 |
cgcttaaggtttccatttttgcttggggattgtt |
45795267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 35213709 - 35213481
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
35213709 |
cgcttaaggtttccatttttgcttgaagattgttacgggataggttgccgactaagaatcaccttctccggcatggcatcattgttggcgaggcagcatt |
35213610 |
T |
|
| Q |
101 |
gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga |
200 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
35213609 |
gtgtgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggcattttgtcaggtgttggattgga |
35213510 |
T |
|
| Q |
201 |
atgtcaggtgctgatccccttaatattga |
229 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
35213509 |
atgtcaggtgttgatccccttaatattga |
35213481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 26855789 - 26855563
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| | |||||||||| |||| ||||||| | |
|
|
| T |
26855789 |
cgctcaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagcgaggcttgtat |
26855690 |
T |
|
| Q |
101 |
gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga |
200 |
Q |
| |
|
|||||| || ||||| || |||| ||| || |||||| | ||||| ||||| | ||||||||| ||||||||||| || |||||| || ||| ||| |
|
|
| T |
26855689 |
gtgtgtcacagggtgcggtatggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtctttgatcgga |
26855590 |
T |
|
| Q |
201 |
atgtcaggtgctgatccccttaatatt |
227 |
Q |
| |
|
|||||||||||||| || |||||||| |
|
|
| T |
26855589 |
atgtcaggtgctgacccttttaatatt |
26855563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43516794 - 43517022
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| |||||| |
|
|
| T |
43516794 |
cgcttaaggtttccatttttgcttggagattgttatgggataggttgccgactaagaatcatctcctccggcgtggcatcatcgttggcgaggtagcatt |
43516893 |
T |
|
| Q |
101 |
gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga |
200 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43516894 |
gtgtgttactgggtgcggcatgacatagtctgtttctcatttatttatacattgtgctactttcggtactttgtggcattttatcaggtgttggattgga |
43516993 |
T |
|
| Q |
201 |
atgtcaggtgctgatccccttaatattga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43516994 |
atgtcaggtgctgatccccttaatattga |
43517022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 20544161 - 20543933
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt |
100 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||| || || |||||||||||||||||||| || ||||| |||||||||| |||| |||||| || | |
|
|
| T |
20544161 |
cgctgaaggtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgagacaagtat |
20544062 |
T |
|
| Q |
101 |
gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga |
200 |
Q |
| |
|
|||||| || ||||| || |||| ||| || |||||||||||||| || || || ||||||||| | ||||||||| || |||||| |||||| ||| |
|
|
| T |
20544061 |
gtgtgtcacagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcgga |
20543962 |
T |
|
| Q |
201 |
atgtcaggtgctgatccccttaatattga |
229 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |
|
|
| T |
20543961 |
atgtcaggtgctgacccctttaatattga |
20543933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 38295820 - 38295784
Alignment:
| Q |
4 |
ttaaggtttccatttttgcttggagattgttacggga |
40 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
38295820 |
ttaaagtttccatttttgcttggaggttgttacggga |
38295784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 40513770 - 40513998
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | || ||||||||||| |
|
|
| T |
40513770 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttcttcggcgtggtatcatcgtcggtgaggcagcatt |
40513869 |
T |
|
| Q |
101 |
gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga |
200 |
Q |
| |
|
||||||| | |||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40513870 |
gtgtgtttccgggtgtggcatggcagagtctgtctctcatttatttctacattgtcctacttttggtactttatggcattttgtcaggtgttggattgga |
40513969 |
T |
|
| Q |
201 |
atgtcaggtgctgatccccttaatattga |
229 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
40513970 |
atgtcatgtgctgatccccttaatattga |
40513998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 34829490 - 34829267
Alignment:
| Q |
6 |
aaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtg |
105 |
Q |
| |
|
||||| ||||| ||||||||| | ||||| ||||| |||||| ||| ||||||| | ||||| | ||||| | |||| || ||| | || |||||| |
|
|
| T |
34829490 |
aaggtctccatctttgcttggcggttgttgcgggacaggttgtcgattaagaataatcttctaagacgtggagtaatcaatgccgaagtagttatgtgtg |
34829391 |
T |
|
| Q |
106 |
ttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtc |
205 |
Q |
| |
|
|||| ||||| |||| || ||||||| |||| || ||||| |||||||| ||||| |||| ||||||||| | |||||| |||||| |||||||| |
|
|
| T |
34829390 |
ttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtcttggatcggaatgtc |
34829291 |
T |
|
| Q |
206 |
aggtgctgatccccttaatattga |
229 |
Q |
| |
|
||||| | | ||| |||||||||| |
|
|
| T |
34829290 |
aggtgttaacccctttaatattga |
34829267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 11196427 - 11196199
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt |
100 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||| || ||||| |||||||||| |||| ||||||||||| | |
|
|
| T |
11196427 |
cgctgaaggtttccatttttacttggcgattgttgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcagttat |
11196328 |
T |
|
| Q |
101 |
gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga |
200 |
Q |
| |
|
||||||||| ||||| || ||||| ||| || |||||||||||||| || || || ||||||||| | ||||||||| || |||||| |||||| || |
|
|
| T |
11196327 |
gtgtgttacagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcaga |
11196228 |
T |
|
| Q |
201 |
atgtcaggtgctgatccccttaatattga |
229 |
Q |
| |
|
|||||||||| || | |||||||||||| |
|
|
| T |
11196227 |
atgtcaggtgtcgacctccttaatattga |
11196199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 32624430 - 32624217
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt |
100 |
Q |
| |
|
|||| |||||||||||||||| |||| |||| || | |||||||||||||||||||| || ||||| |||||||||| |||| ||||||||| | |
|
|
| T |
32624430 |
cgctgaaggtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgaggcatgtat |
32624331 |
T |
|
| Q |
101 |
gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga |
200 |
Q |
| |
|
|||||| || || || || |||| ||| || |||||||||||||| ||||| || ||||||||| | ||||||||| || |||||| |||||||||| |
|
|
| T |
32624330 |
gtgtgtcacaggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattgga |
32624231 |
T |
|
| Q |
201 |
atgtcaggtgctga |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32624230 |
atgtcaggtgctga |
32624217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 144246 - 144301
Alignment:
| Q |
159 |
acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga |
214 |
Q |
| |
|
||||||||| ||||||||||| || |||||| |||||| ||||||||||||||||| |
|
|
| T |
144246 |
acttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctga |
144301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 14687072 - 14687285
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| | |||||||||| |||| | |||| | |
|
|
| T |
14687072 |
cgcttaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagtgaggtttgtat |
14687171 |
T |
|
| Q |
101 |
gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga |
200 |
Q |
| |
|
|||||| || ||||| || ||| ||| || |||||| | ||||| ||||| | ||||||||| ||||||||||| || |||||| |||||| ||| |
|
|
| T |
14687172 |
gtgtgtcacagggtgcggtgtggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggatcgga |
14687271 |
T |
|
| Q |
201 |
atgtcaggtgctga |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14687272 |
atgtcaggtgctga |
14687285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 26513795 - 26513744
Alignment:
| Q |
6 |
aaggtttccatttttgcttggagattgttacgggataggttgccgactaaga |
57 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
26513795 |
aaggtttccatttttgcttggcagttgttgcgggataggttgccgaccaaga |
26513744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 21367982 - 21368210
Alignment:
| Q |
1 |
cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggca-gcat |
99 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||| || | |||||||||||||||||||| || || || |||||||||| |||| ||||||||| | | |
|
|
| T |
21367982 |
cgctgaaggtttccattttttcttggcgattattgagagataggttgccgactaagaaccatctcctaaggcgtggcataatcaacggcgaggcatgtaa |
21368081 |
T |
|
| Q |
100 |
tgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgg |
199 |
Q |
| |
|
| ||||| || ||||| || |||| ||| || ||| || | ||||| ||||| || ||||||||| | ||||||||| || |||||| |||||| || |
|
|
| T |
21368082 |
t-tgtgtcacagggtgcggtatggaagagactacatcttatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcgg |
21368180 |
T |
|
| Q |
200 |
aatgtcaggtgctgatccccttaatattga |
229 |
Q |
| |
|
||||||||||||||| || ||||||||||| |
|
|
| T |
21368181 |
aatgtcaggtgctgaccctcttaatattga |
21368210 |
T |
|
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