View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7393_low_2 (Length: 481)
Name: NF7393_low_2
Description: NF7393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7393_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 7 - 464
Target Start/End: Original strand, 42137933 - 42138391
Alignment:
| Q |
7 |
cagaacctgtgaaaag-ggaaagttatagccaatcttgtttcatataataaataatgtggacacctaatgacaagtttcttgcaacaggatttgttagtt |
105 |
Q |
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| T |
42137933 |
cagaacctgtgaaaaatggaaagttatagccaatcttgtttcatataataaataacgtggacacctaatgacaagtttcttgcaacaggatttgttagtt |
42138032 |
T |
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| Q |
106 |
accgactggtttctggttacaagaagatcaagttcatcaatgagcaaaatacatggtcggtcagcctcttcaccagttttcttcccttctacaaacctct |
205 |
Q |
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| T |
42138033 |
accgactggtttctggttacaagaagatcaagttcatcaatgagcaaaatacatggtcggtcagcctcttcaccagttttcttcccttctacaaacctct |
42138132 |
T |
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| Q |
206 |
catttagcaaacggagagcctctttccatccaaccctgtgtccatttaacgcttcatatatgacctaaaatagtattggaagtcggaaccataaggcaac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42138133 |
catttagcaaacggagagcctctttccatccaaccctgtgaccatttaatgcttcatatatgacctaaaatagtattggaagtcggaaccataaggcaac |
42138232 |
T |
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| Q |
306 |
caaggaatttggtcataaaaccaaaaacagtaaaacatttgtgaacttcaccttgtaaatattctccggtgaagccaatttcagaccattgatctccacg |
405 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42138233 |
caaggaatttggtcataaaaccaaaaacagtaaaagatttgtgaacttcaccttgtaaatattctccggtgaagccaatttcagaccattgatctccacg |
42138332 |
T |
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| Q |
406 |
aaacagtatggtttgatgtttcctgcatcaacttctgacttcaaactcctcatcactga |
464 |
Q |
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| T |
42138333 |
aaacagtatggtttgatgtttcctgcatcaacttctgacttcaaactcctcatcactga |
42138391 |
T |
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