View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7393_low_5 (Length: 252)

Name: NF7393_low_5
Description: NF7393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7393_low_5
NF7393_low_5
[»] chr2 (6 HSPs)
chr2 (1-252)||(2803215-2803466)
chr2 (1-74)||(33561500-33561573)
chr2 (2-74)||(30312825-30312897)
chr2 (1-74)||(29873586-29873659)
chr2 (2-43)||(36005930-36005971)
chr2 (14-99)||(13766795-13766882)
[»] chr6 (4 HSPs)
chr6 (2-74)||(8481962-8482034)
chr6 (7-74)||(5034876-5034943)
chr6 (33-74)||(27226675-27226716)
chr6 (2-74)||(6071168-6071240)
[»] chr5 (2 HSPs)
chr5 (1-104)||(10351220-10351325)
chr5 (2-74)||(36521946-36522018)
[»] chr4 (3 HSPs)
chr4 (21-99)||(42480533-42480611)
chr4 (2-43)||(22028417-22028458)
chr4 (2-74)||(34544142-34544215)
[»] chr1 (3 HSPs)
chr1 (2-74)||(1188638-1188710)
chr1 (1-74)||(1187413-1187486)
chr1 (2-43)||(32594766-32594807)
[»] chr7 (1 HSPs)
chr7 (2-43)||(21619095-21619136)
[»] chr3 (2 HSPs)
chr3 (33-74)||(260805-260846)
chr3 (22-99)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2803215 - 2803466
Alignment:
Q  1 tcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaacc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2803215 tcacacttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtgagacttttaacc 2803314  T
Q  101 tacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaaaaacatgtcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803315 tacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaaaaacatgtcca 2803414  T
Q  201 atatgaatatcaacactattgtaagtaaccgagtgggggtggtcctttgctt 252  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2803415 atatgaatatcaacactatagtaagtaaccgagtgggggtggtcctttgctt 2803466  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33561500 - 33561573
Alignment:
Q  1 tcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    ||||||| ||||||||||| |||||||| |||||||||||||| ||||  ||||| | |||| |||||||||||    
T  33561500 tcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt 33561573  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 30312897 - 30312825
Alignment:
Q  2 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    |||||||||||||||||| |||||  | | ||||||||||||||||   ||||| | ||||||||||||||||    
T  30312897 cacacttttacccaaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttcaacctccactt 30312825  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 29873586 - 29873659
Alignment:
Q  1 tcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    ||||||| |||| |||||| ||||| || |||||||||| ||| || |  ||||| ||||||||||||||||||    
T  29873586 tcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttcaacctccactt 29873659  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 36005930 - 36005971
Alignment:
Q  2 cacacttttacccaaaacgttaagacattgagtttatgggtc 43  Q
    |||||||||||||||||| ||||| || ||||||||||||||    
T  36005930 cacacttttacccaaaaccttaaggcaatgagtttatgggtc 36005971  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 13766882 - 13766795
Alignment:
Q  14 caaaacgttaagacattgagtttatgggtcatctc--ttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 99  Q
    |||||| ||||| ||||||||||||  ||||||||  ||||||| |||  ||||||||||||| | |||| ||||| |||||| ||||    
T  13766882 caaaaccttaagtcattgagtttattagtcatctcacttttataaaataatcaacctccacttttctaaacaatgttagacttctaac 13766795  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 8482034 - 8481962
Alignment:
Q  2 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    |||||| ||||||||||  ||||| || |||||||||| |||||||| |||||| | ||||||||||||||||    
T  8482034 cacactcttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt 8481962  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 5034876 - 5034943
Alignment:
Q  7 ttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    ||||| ||||||| |||| |||||||||| ||||||||||||  ||||| | || |||||||||||||    
T  5034876 ttttatccaaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccactt 5034943  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 27226675 - 27226716
Alignment:
Q  33 gtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  27226675 gtttatgggtcatctcatttataaaatgatcaacctccactt 27226716  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 6071240 - 6071168
Alignment:
Q  2 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    |||||| ||| ||||||  ||||| || ||||||||||| |||||||  ||||| | ||||||||||||||||    
T  6071240 cacactcttatccaaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccactt 6071168  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 10351220 - 10351325
Alignment:
Q  1 tcacacttttacccaaaacg--ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaa 98  Q
    ||||||||||||||||||    |||||||| |||||||||||||||| ||   |||| |||||||||||||| ||| ||||   |||||||||||| |||    
T  10351220 tcacacttttacccaaaaatatttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgtgagacttctaa 10351319  T
Q  99 cctaca 104  Q
    | ||||    
T  10351320 cttaca 10351325  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 36521946 - 36522018
Alignment:
Q  2 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    |||||| ||||||||||| ||||| || |  ||||||||||| |||| |||| ||| ||||||||||| ||||    
T  36521946 cacactcttacccaaaaccttaaggcaattggtttatgggtcctctcatttaaagagtgttcaacctcaactt 36522018  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
Q  21 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 99  Q
    ||||||||| |||||||||| |||||||  ||| | | |||||||||||||||| || ||||| | |||||||||||||    
T  42480611 ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac 42480533  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 22028417 - 22028458
Alignment:
Q  2 cacacttttacccaaaacgttaagacattgagtttatgggtc 43  Q
    |||||| ||||||||||| |||||||| ||||||||||||||    
T  22028417 cacactcttacccaaaacattaagacaatgagtttatgggtc 22028458  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 34544215 - 34544142
Alignment:
Q  2 cacacttttacccaaaa-cgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    |||||| |||||||||| | ||||| || |||||||||||||| |||| |||||| | || |||||||||||||    
T  34544215 cacactcttacccaaaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccactt 34544142  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 1188638 - 1188710
Alignment:
Q  2 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    |||||||||||||||||| ||||  || |||||||||| ||| ||||  ||||| ||| ||||||||||||||    
T  1188638 cacacttttacccaaaaccttaaagcaatgagtttatgagtcttctcacttataaaatattcaacctccactt 1188710  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1187413 - 1187486
Alignment:
Q  1 tcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    |||||||||||| |||||  |||||  | |||||||||||||| ||||  ||||| |||||| |||||||||||    
T  1187413 tcacacttttactcaaaatcttaaggtaatgagtttatgggtcttctcacttataaaatgtttaacctccactt 1187486  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 32594766 - 32594807
Alignment:
Q  2 cacacttttacccaaaacgttaagacattgagtttatgggtc 43  Q
    |||||| ||||||||||| |||||||| ||||||||||||||    
T  32594766 cacactcttacccaaaaccttaagacaatgagtttatgggtc 32594807  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 21619095 - 21619136
Alignment:
Q  2 cacacttttacccaaaacgttaagacattgagtttatgggtc 43  Q
    |||||||||||||||||| |||||||| || |||||||||||    
T  21619095 cacacttttacccaaaaccttaagacaatgggtttatgggtc 21619136  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 260805 - 260846
Alignment:
Q  33 gtttatgggtcatctcttttatagaatgttcaacctccactt 74  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  260805 gtttatgggtcatctcatttataaaatgatcaacctccactt 260846  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 32930775 - 32930698
Alignment:
Q  22 taagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 99  Q
    |||||||||||||||||| ||||||||  ||||| |||||||||| || |||| | |||| ||| | |||||| ||||    
T  32930775 taagacattgagtttatgagtcatctcacttataaaatgttcaacttctacttttctaaacaatataagacttctaac 32930698  T

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